|
| Status |
Public on Apr 29, 2010 |
| Title |
T.8Nve.PP#4 |
| Sample type |
RNA |
| |
|
| Source name |
Peyer's patches
|
| Organism |
Mus musculus |
| Characteristics |
age: 6 weeks
exclusion markers: PI CD4 CD11b CD11c CD19 CD25 CD49b Gr-1 Ter119
genetic background: C57BL/6J
phenotype markers: TCRb+ CD8+ CD44low CD62Lhigh
separation method: dissection/trimming
Sex: male
|
| Extracted molecule |
total RNA |
| Extraction protocol |
glass slide teasing double sort on ARIA
|
| Label |
Biotin
|
| Label protocol |
Affy GeneChip WT cDNA Synthesis kit/cRNA Cleanup kit
|
| |
|
| Hybridization protocol |
Affy 1.0 ST Hyb Kit
|
| Scan protocol |
Affymetrix GeneChip Scanner
|
| Description |
T.8Nve.PP#4, Peyers Patches Naive CD8
|
| Data processing |
The datasets were pre-filtered to keep only those probesets for which a gene symbol could be found in the Affymetrix annotation. CEL files were normalized using Affymetrix Power Tools on the predefined probeset ID list mentioned above, and using the standard RMA workflow (background adjustment, quantile normalization, median polish probeset summarization). Output on 2^ scale.
|
| |
|
| Submission date |
Apr 27, 2010 |
| Last update date |
May 24, 2016 |
| Contact name |
Liang Yang |
| Organization name |
Harvard Medical School
|
| Department |
Pathology
|
| Lab |
CBDM
|
| Street address |
77 Avenue Louis Pasteur
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
| |
|
| Platform ID |
GPL6246 |
| Series (1) |
|
