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Sample GSM5420 Query DataSets for GSM5420
Status Public on Apr 05, 2003
Title Spleen vs 2-Methyl-thio-ATP Treated B cell 30min (set1)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name 2-Methyl-thio-ATP Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with 2-Methyl-thio-ATP for 30min
 
Submission date Apr 03, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE370 Spleen vs 2-Methyl-thio-ATP Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.148533 42903.2 30475.9 65516.7 65516.8 65517 65517 0.791623 0.6245 867.412 1278.7 853 1248 85.003 173.341 0
2 -0.0181236 304.228 291.793 1249.83 1751.39 1234 1666 254.028 394.174 861.941 1195.64 848.5 1121 102.167 218.648 0
3 0 59.46 41.2921 780.696 1035.13 779 1007 71.7733 128.036 787.738 1022.42 776 1011 70.0119 73.4509 0
4 -0.137654 130.53 95.0726 895.545 1134.05 884 1100.5 70.7307 90.9288 769.371 1000.5 762 1000 52.8429 65.7838 0
5 -0.155302 66.3692 46.4156 796.591 1035.18 761.5 1014.5 97.5708 101.401 759.041 1013.49 760 1006 36.0536 70.7885 0
6 -0.130602 584.007 432.331 1617.92 1824.65 1616 1811 189.259 276.074 779.959 1012.03 774 1008 45.8615 69.3128 0
7 -0.066628 95.504 81.9207 841.56 1131.92 805 1116 90.6059 169.584 763.361 1026.63 760 1022 46.9037 72.6327 0
8 -0.0367582 42.9618 39.4752 763.217 1009.7 757 996 40.9545 85.0018 755.743 1003.24 748.5 995.5 38.3357 74.8456 0
9 0.159865 4322.58 6246.08 7614.48 13347.2 7510 13034 761.339 1832.61 768.741 971.301 762 953 61.8014 110.931 0.531060035
10 0.191688 385.576 599.512 1286.32 2119.8 1235 1905 203.249 692.675 750.342 949.459 750.5 933.5 33.2208 71.2606 0
11 0 37.5035 35.0712 726.217 913.478 721 910 33.3684 40.8544 739.66 916.075 732 911 43.4681 65.4957 0
12 0.0396172 39.7638 43.5618 728.273 912.409 724 917 33.2883 63.4828 724.566 895.154 721 889 29.6162 53.4332 0
13 0.0152025 42.0751 43.5741 732.038 900 723 882 38.6787 75.6048 725.443 883.013 718 878.5 30.6925 54.8268 0
14 0.138622 1014.67 1396.19 2216.23 3690.35 2329 3165 971.786 1968.75 715.679 869.1 710.5 860.5 28.7055 48.9681 0
15 0.0768859 3547.46 4234.52 6298.25 9280.39 5797.5 7879.5 3883.34 6297.35 712.378 885.284 710 886 28.4759 50.7188 0
16 0.14624 1879.19 2631.54 3594.71 6166.96 4001.5 6877.5 1014.88 1815.19 704.374 900.787 706 893 26.1973 51.5508 0.485798765
17 -0.474031 2166.82 727.432 3967.57 2335.89 2197 1608 3244.55 1378.51 709.554 915.172 708 913 30.2232 54.9733 0
18 0.0383011 967.639 1056.85 2139.54 3039.43 2190 3105.5 266.565 397.82 712.62 924.827 710 919.5 30.5951 58.5478 0.1272335
19 0.369233 6239.8 14601.7 10572.9 30104.5 10882 30578 1169.49 4167.05 711.647 922.052 709 921 29.9784 61.8508 1.226565476
20 -0.178433 5997.12 3976.58 10224.3 8755.75 9955 8742 740.098 509.111 717.02 906.408 714 898 34.0991 57.6186 -0.592741596

Total number of rows: 16273

Table truncated, full table size 1974 Kbytes.




Supplementary data files not provided
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