|
| Status |
Public on Apr 29, 2023 |
| Title |
genomic DNA from patient 5676 |
| Sample type |
genomic |
| |
|
| Source name |
Patient Derived Xenograft
|
| Organism |
Homo sapiens |
| Characteristics |
ctcf status: CTCF Deletion
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Total DNA was isolated by standard procedures
|
| Label |
Cy3 and Cy5
|
| Label protocol |
Standard Illumina labelling protocol
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using iScan using standard recommended Illumina scanner setting
|
| Description |
5676
|
| Data processing |
Data was processed using the packages: minfi_1.38.0 and meffil_1.1.2
|
| |
|
| Submission date |
Aug 17, 2021 |
| Last update date |
Apr 29, 2023 |
| Contact name |
Rico Hagelaar |
| E-mail(s) |
[email protected]
|
| Organization name |
Princess Maxima Center
|
| Street address |
Heidelberglaan 25
|
| City |
Utrecht |
| ZIP/Postal code |
3584CS |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL21145 |
| Series (2) |
| GSE182313 |
Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia [BeadChip Methylation] |
| GSE182317 |
Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia |
|
