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Sample GSM5531 Query DataSets for GSM5531
Status Public on Apr 05, 2003
Title Spleen vs CpG-oligodeoxynucleotide Treated B cell 240min (set3)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name CpG-oligodeoxynucleotide Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with CpG-oligodeoxynucleotide for 240min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE378 Spleen vs CpG-oligodeoxynucleotide Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.0240438 41997.4 39735.5 65516.6 54791 65516.5 54343 0.685257 5083.15 1071.96 1128.84 1071 1124.5 32.3277 59.4212 0
2 0.126447 380.892 509.622 1624 1760.65 1624 1752 205.832 184.851 1093.31 1146.32 1080 1148 56.2275 60.1035 0
3 -0.239989 90.3784 52.0087 1159.6 1154.76 1166 1148 32.6382 55.3205 1102.25 1143.87 1103 1150 41.6665 65.1999 0
4 -0.0997017 148.751 118.238 1218.96 1228.46 1212 1231 66.4919 57.2447 1073.02 1122.04 1065 1124 38.8597 55.1921 0
5 -0.0735496 43.5191 36.7393 1061.64 1115.32 1059 1120 43.8234 44.1623 1064.28 1125.07 1065 1121.5 26.1156 59.7759 0
6 0.0352 878.114 952.25 2344.07 2356.93 2364.5 2393 162.828 229.972 1073.56 1121.72 1073 1124 30.6963 58.1705 0
7 -0.166194 52.8473 36.0436 1060.4 1112.92 1061 1114 33.2854 39.2268 1052.11 1125.01 1051 1136.5 25.887 57.1461 0
8 0.0171219 42.9446 44.6714 1048.93 1127 1052 1129.5 33.9814 57.0458 1051.48 1122.82 1053 1116 30.6548 56.7218 0
9 0.155922 4426.83 6338.91 7769.2 9622.12 7675 9425 468.11 905.064 1055.04 1085.52 1054 1084 31.848 57.8643 0.517961672
10 -0.00106266 42.9953 42.8903 1044.23 1121.62 1037.5 1111 22.0296 66.9406 1046.88 1120.53 1045 1118 33.7997 60.8349 0
11 0.533889 686.443 2346.9 2028.09 4297.43 2022 4244 178.557 868.948 1050.41 1120.85 1050 1122 30.7323 48.3603 1.773540869
12 -0.053786 51.7103 45.6868 1046.96 1140.67 1047.5 1136.5 33.454 50.1386 1038.88 1136.06 1039 1137 26.9941 50.6479 0
13 0.0250715 47.4018 50.2188 1042.46 1148.04 1046 1146.5 34.9597 46.0352 1039.16 1135.07 1039 1136 26.4629 56.7311 0
14 0.249147 998.56 1772.24 2484.59 3478.22 2122 3023 1176.15 1975.15 1039.17 1100.12 1038 1098 30.0291 49.3438 0
15 0.0381866 4118.86 4497.42 7291.32 7123.56 7789 8587 3683.31 3367.78 1040.56 1097.17 1043 1091 33.3043 56.9259 0
16 0.255991 1908.56 3441.09 3894.7 5725.19 3854 5844 530.44 1009.15 1035.76 1115.75 1036 1115 30.0542 58.7246 0.850383695
17 -0.405359 884.41 347.772 2340.67 1513.1 1981 1430 931.56 254.82 1029.19 1124.08 1026 1117.5 32.928 52.1586 0
18 0.192025 808.867 1258.64 2202.24 2763.48 2245 2800 145.713 190.386 1039.1 1100.33 1036 1103 30.4078 52.4855 0.637893242
19 0.303426 4178.53 8403.3 7374.32 12398.7 7409.5 12397.5 1038.4 2194.35 1039.75 1055.46 1037 1052 32.5104 49.9437 1.007959354
20 -0.216541 6591.27 4003.39 11061 6389.36 10911 6349.5 1132.07 581.391 1038.78 1028.09 1036 1029 33.3721 48.292 -0.719333632

Total number of rows: 16273

Table truncated, full table size 1994 Kbytes.




Supplementary data files not provided
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