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Sample GSM5587 Query DataSets for GSM5587
Status Public on Apr 05, 2003
Title Spleen vs Growth Hormone Release Hormone (GHRH) Treated B cell 240min (set1)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Growth Hormone Release Hormone (GHRH) Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Growth Hormone Release Hormone (GHRH) for 240min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE382 Spleen vs GHRH Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.0883181 46323.8 37799.5 65517.1 65516.6 65517 65516.5 0.652805 0.643309 797.675 877.669 796 870 36.5635 60.0132 0
2 -0.0975085 215.452 172.124 997.75 1101.36 1000 1091 54.1491 86.9023 779.427 858.58 777 855 31.0182 51.1247 0
3 0.0595979 85.9364 98.5769 835.519 969.852 829 931 49.3382 109.355 780.764 858.554 777 852 32.8228 60.0402 0
4 -0.191464 85.8831 55.2642 831.759 883.931 833 876 28.3456 55.4565 780.273 860.677 777 852 31.8361 65.6222 0
5 -0.0627068 52.8872 45.7766 797.88 871.24 795 863 36.5768 57.2948 784.576 864.753 783.5 865.5 28.4778 58.6715 0
6 -0.0864283 577.123 472.977 1505.12 1608.42 1504 1611 115.65 109.208 790.375 843.066 787 839 27.808 46.5504 0
7 -0.0262006 69.7188 65.6371 811.231 879.077 793 868 48.6615 63.0307 777.51 832.706 776 835 31.4086 55.173 0
8 -0.0450702 43.9718 39.6373 772.385 811.423 762 816 23.8949 39.189 769.31 817.174 768 813 26.5754 49.972 0
9 0.219241 5360.34 8880.42 8949.46 14606.5 9113.5 15535 1146.09 2865.63 777 830.019 773 825 33.083 57.6591 0.728302837
10 0.507055 652.383 2096.8 1653.58 4325.15 1574.5 4129.5 191.069 1059.72 780.583 844.058 779.5 841 26.5001 53.2191 1.68440025
11 0.00664261 39.1754 39.7792 790.75 861.792 791 854.5 40.3358 61.1832 792.867 866.58 791 863 34.0249 70.5314 0
12 -0.027903 100.929 94.6481 903.88 1037.36 879 935 129.105 233.52 831.467 935.773 824 909 52.9247 109.823 0
13 0 59.1432 38.3587 805.261 870.783 801 868 28.6439 46.3062 829.507 918.704 821 903 55.1841 98.4317 0
14 0.191199 1018.03 1581.1 2207.25 3459.46 2234.5 3554.5 164.817 343.241 811.103 878.034 811 872 36.8343 65.3363 0.63514933
15 -0.0507395 2875.37 2558.32 5071.04 4862.12 3147.5 2950.5 3592.16 3490.25 812.101 865.304 811 858.5 37.9776 64.0921 0
16 0.0563118 1337.27 1522.41 2707.42 3376.33 2043 2486.5 1027.6 1280.56 840.981 920.461 834.5 915.5 44.788 81.8175 0
17 -0.472752 977.004 328.961 2106.17 1445.43 1974 1386 420.529 177.321 858.091 947.221 862 941.5 47.9352 86.7499 -1.570448151
18 0.157913 643.726 926.006 1703 2518.88 1702.5 2469 181.128 283.285 873.506 979.526 875 971 51.2438 87.217 0.524575631
19 0.201993 5690.71 9060.67 9577.17 15130 9663 15303 1358.3 2295.44 903.641 1063.4 889.5 1035 72.1648 151.311 0.671006222
20 -0.0986668 5288.19 4213.47 9002.42 7646.31 8803.5 7391 1113.73 745.195 951.874 1152.22 948 1148 86.1172 168.736 -0.327764015

Total number of rows: 16273

Table truncated, full table size 1975 Kbytes.




Supplementary data files not provided
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