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Sample GSM559269 Query DataSets for GSM559269
Status Public on Feb 23, 2011
Title CT3-MyB 0hr after β-E2 withdraw, Replicate 1
Sample type RNA
 
Source name CT3-MYB
Organism Mus musculus
Characteristics condition: CT3-MyB 0hr after β-E2 withdraw
replicate: 1
strain: CBA
cell line: CT3-Myb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridisation protocol
Scan protocol Standard Illumina scanning protocol
Description 0hr Replicate 1
Data processing Normalised using variance stabilisation and quantile normalisation using the R package lumi
 
Submission date Jun 23, 2010
Last update date Feb 23, 2011
Contact name paul james LEO
E-mail(s) [email protected]
Phone +61 7 3240 7740
Fax +61 7 3240 5946
Organization name UQ Diamantina Institute for cancer, Immunology and Metabolic Medicine
Lab Gonda
Street address Princess Alexandria Hospital, Level 4 R-wing
City Brisbane
State/province Queensland
ZIP/Postal code 4102
Country Australia
 
Platform ID GPL6238
Series (1)
GSE22486 Defining the Myb Transcriptional Program Controlled by via Genome-wide Chromatin Occupancy and Expression Analyses

Data table header descriptions
ID_REF
VALUE quantile normalization
Detection Pval

Data table
ID_REF VALUE Detection Pval
10181072_239_rc-S 8.19627621 0.46101
10181072_290_rc-S 8.213955437 0.59326
10181072_290-S 8.21289114 0.58515
10181072_311_rc-S 8.391202175 0.97006
10181072_311-S 8.160017196 0.18777
10181072_418_rc-S 8.213422222 0.58702
10181072_418-S 8.121045983 0.068
10181072_486_rc-S 8.242252611 0.75671
10181072_486-S 8.215592393 0.60512
17974913_3385_rc-S 8.258324715 0.81659
17974913_3385-S 8.174042131 0.28384
17974913_3999_rc-S 8.214642052 0.59825
17974913_4071_rc-S 8.148330838 0.13412
17974913_4071-S 8.161590011 0.19526
17974913_4426_rc-S 8.19627621 0.46351
17974913_4426-S 8.216313227 0.61011
17974913_4962_rc-S 8.145478509 0.12289
17974913_4962-S 8.187248652 0.38116
18S_rRNA_X00686_301-S 15.796322 1
18S_rRNA_X00686_523-S 13.79657104 1

Total number of rows: 46615

Table truncated, full table size 1781 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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