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Sample GSM5696 Query DataSets for GSM5696
Status Public on Apr 05, 2003
Title Spleen vs MIP3-alpha Treated B cell 240min (set2)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name MIP3-alpha (Macrophage inflammatory protein-3) Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with MIP3-alpha (Macrophage inflammatory protein-3) for 240min
 
Submission date Apr 05, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE391 Spleen vs MIP3-alpha Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.0157468 44335.4 42756.7 65516.7 65516.7 65517 65517 0.599824 0.722832 760.318 1390.06 757 1391 30.8427 76.1578 0
2 -0.229261 220.406 130.005 966.111 1541 976 1552 43.0807 96.1281 759.14 1359.5 757 1362 33.0998 81.7241 0
3 0.380283 34.1676 82.0157 753.15 1463.3 748 1435 33.7472 116.088 751.56 1358.81 748 1361 32.5781 76.7185 0
4 -0.353141 116.292 51.5713 843.269 1401.08 849.5 1393 36.1857 73.0649 756.034 1372.73 755 1384 31.6986 83.6565 0
5 0.105982 38.8815 49.6278 759.875 1390.71 753.5 1385 29.0102 78.0192 753.245 1358.19 749 1363 32.4066 86.587 0
6 -0.112938 636.73 490.928 1432.08 2230.17 1430.5 2211.5 94.224 196.674 753.086 1346.4 747 1338 33.039 81.0634 0
7 -0.165764 53.0477 36.2161 756.174 1340.87 750 1345 40.1855 83.1353 736.566 1344.84 733.5 1336 28.7081 85.6352 0
8 0.00931292 40.8664 41.7522 748.846 1364.23 748 1360.5 29.7048 94.2322 740.684 1349.41 738.5 1343.5 31.791 80.8098 0
9 0.1944 5957.93 9321.7 9272.8 15518.6 9141 15575 1418.06 2736.31 745.483 1359.75 746 1368 24.4273 75.5025 0.645782822
10 0.398358 961.422 2405.87 1886.76 5614.76 1801 5583 432.157 1757.11 746.51 1360.12 744 1363 29.383 81.7401 1.323316632
11 0.12406 48.3421 64.3259 775.833 1437.29 771 1437 41.9116 103.485 758.91 1374.97 753.5 1374 31.8951 82.6253 0
12 0.0738372 45.2279 53.6097 775.08 1444.76 771 1437 43.85 89.1858 761.875 1404.8 757 1390.5 36.2917 95.2226 0
13 0.134324 36.0651 49.1372 773.92 1439.28 771 1432 31.7738 63.9111 772.336 1406.72 768 1404 33.2862 83.9882 0
14 0.392954 949.756 2347.29 1890.96 5571.15 1945 5795 202.927 742.316 767.454 1412.8 764.5 1416.5 30.8712 80.8885 1.305364933
15 -0.0363218 3149.66 2896.96 4903.77 6156.23 2615.5 3815 3772.95 4186.59 773.987 1426.46 766 1423.5 35.6387 94.1463 0
16 0.0840875 1536.32 1864.53 2637.31 4676.62 2475.5 4295 949.205 1683.25 773.177 1441.48 770 1433 33.9782 97.5337 0
17 -0.445086 710.857 255.092 1536.17 1886.87 1469 1822 414.02 228.808 779.773 1464.88 774.5 1459.5 38.1618 97.9761 0
18 0.255785 576.265 1038.5 1397.31 3377.54 1390.5 3384.5 118.109 211.488 773.493 1451.98 773 1447.5 33.8869 75.2271 0.849699378
19 0.256225 4954.02 8936.81 7800.96 15140.4 8066.5 15675 1056.16 1812.6 774.532 1455.33 773 1454 30.8765 78.7994 0.851161026
20 0.0240301 5068.9 5357.27 7825 9805.54 7915.5 9983.5 706.691 803.662 780.577 1465.71 775 1470 33.879 86.2993 0.079826264

Total number of rows: 16273

Table truncated, full table size 1985 Kbytes.




Supplementary data files not provided
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