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Sample GSM5797 Query DataSets for GSM5797
Status Public on Apr 09, 2003
Title Spleen vs TGF-beta Treated B cell 120min (set3)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name TGF-beta (transforming growth factor-beta) Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with TGF-beta (transforming growth factor-beta) for 120min
 
Submission date Apr 08, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE400 Spleen vs TGF-beta (transforming growth factor-beta) Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.11268 44381.5 34239 65516.8 65479.6 65517 65516 0.701964 77.1756 590.795 650.815 592 647 25.9099 36.0899 0
2 -0.0219907 261.101 248.209 978.269 1095.65 1037.5 1124 195.427 233.222 618.524 650.905 600 651 49.3752 40.6503 0
3 0 36.3184 21.8105 613.708 649.917 600 641 43.3725 50.8604 625.293 641.803 615 639 45.6056 48.1463 0
4 -0.17298 84.7649 56.9162 710.481 715.296 706 722 42.3442 71.2902 608.839 634.217 600 634 37.8234 35.2744 0
5 0.1764 17.7151 26.5915 599.4 658.76 590 652 27.0308 29.6975 594.347 633.381 591 637 22.4468 35.8936 0
6 -0.0201436 700.428 668.683 1604.36 1878.36 1662.5 1879 189.259 245.615 599.483 639.912 599 638 18.5396 33.7902 0
7 0.10617 32.3149 41.2641 616.045 690.909 601.5 671 50.7238 64.8301 590.322 637.445 591 638.5 18.9598 35.2322 0
8 0 18.0669 16.5591 585.926 640.37 583 636 16.2952 45.0095 588.325 637.786 583 636.5 23.2176 35.7186 0
9 0.177574 6350.52 9558.36 10609.7 17396.3 10641 17480 750.909 1443.91 598.633 650.047 593 646.5 25.988 43.7378 0.58988806
10 0.137963 404.259 555.422 1163.12 1679.12 1138 1593 200.017 500.576 593.556 650.854 593 645.5 18.7366 39.0741 0
11 0.0391566 17.877 19.5637 602.917 648.25 601.5 651 31.3756 21.6479 597.869 637.214 596 635 20.1299 37.6763 0
12 0 17.1767 15.7455 589.292 621.667 585 618 17.2235 30.069 595.178 637.752 595 636 21.2924 35.2097 0
13 -0.0851485 24.972 20.526 610.458 669.333 603.5 665.5 25.2844 32.6998 595.755 658.204 592 654 22.7535 42.9469 0
14 0.247028 1422.35 2512.08 2738.86 5235.04 2877.5 5554.5 811.223 1805.99 598.519 677.288 596.5 676 23.3668 39.5776 0.820609253
15 0.112335 5112.82 6622.1 8637.82 12306.1 8796.5 13263 5479.26 8092.57 600.046 686.612 599 687 21.7941 38.2867 0
16 0.266534 2487.09 4594.36 4454.61 8783 5108 10026.5 1458.6 2854.04 589.1 658.05 587 659 18.0924 39.5692 0.885406783
17 -0.568237 2193.04 592.665 3797.36 1714.04 2039.5 1175 3033.84 964.206 581.039 630.569 581 627 18.8058 35.7428 0
18 0.10051 999.926 1260.31 2047.27 2988.46 2045 3041 357.948 509.674 591.483 649.131 589 643 23.3967 39.0876 0.333886993
19 0.323165 7673.6 16149.7 12608.3 29159.5 13010 30201.5 1736.27 4059.57 590.359 649.438 588 644 23.8732 40.5879 1.073530893
20 -0.0182532 6022.13 5774.27 10058.6 10772.9 10634 11132.5 2188.34 2520.2 586.655 646.51 587 644 17.2242 33.8227 -0.060635818

Total number of rows: 16273

Table truncated, full table size 1951 Kbytes.




Supplementary data files not provided
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