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Sample GSM5816 Query DataSets for GSM5816
Status Public on Apr 09, 2003
Title Spleen vs Untreated B cell Time 0 (set6)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Untreated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from untreated mouse (male c57BL/6) B cells
 
Submission date Apr 08, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE402 Spleen vs Untreated, cultured B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.160235 64284.1 44449.7 65516.7 63081.8 65517 64521 0.859006 2692.06 1011.1 1488.12 998.5 1479 61.8579 124.834 0
2 -0.155135 89.5254 62.6342 983.958 1376.58 984 1370.5 31.4926 64.0339 933.456 1383.84 933 1381 41.9102 85.818 0
3 -0.0280591 69.3832 65.0422 924.04 1282.52 918 1284 51.4543 69.2376 892.993 1251.82 890 1251 36.8105 59.6179 0
4 -0.0664437 67.4099 57.8469 903.609 1210.78 902 1213 32.698 27.8159 875.677 1203.75 875 1209 45.161 79.3652 0
5 0.0764336 85.9775 102.522 906.393 1225.75 898 1229.5 38.1152 72.1637 854.312 1150.29 853 1150.5 31.731 59.5212 0
6 -0.106652 305.627 239.078 1182.14 1408.93 1175 1421.5 72.357 82.6371 849.581 1193.3 851.5 1190 39.5691 58.806 0
7 -0.0213246 82.5812 78.6243 850.885 1179.35 850 1171 44.4336 49.8429 804.442 1132.48 807.5 1127 33.6786 65.0114 0
8 -0.0660768 45.7941 39.3308 816.462 1119.69 810.5 1108.5 29.8961 49.0492 811.497 1123.79 811 1120 38.7229 55.1793 0
9 0.243817 4696.62 8233.84 6340.67 10723.2 6348.5 10727 234.541 481.424 809.397 1114.67 808 1113.5 35.3693 55.0478 0.809942542
10 0.268565 744.211 1381.21 1661.41 2623.3 1603 2525 277.248 568.65 793.22 1105.07 791 1103 36.0853 54.2187 0.892153619
11 0.0119017 50.8931 52.3071 791.25 1097.42 783 1111 39.0799 43.7919 780.428 1082.32 777 1074.5 34.2878 61.9153 0
12 0.125957 46.0831 61.5883 774.778 1085.93 777 1098 34.0128 52.1808 768.689 1058.22 762 1055 34.9632 53.1419 0
13 -0.0564889 49.1695 43.1724 776 1059.88 773 1067 29.4392 64.6086 767.333 1056.89 762 1060 35.086 57.0659 0
14 -0.140031 1073.91 777.921 2033.35 1850.92 1651.5 1881.5 885.498 342.724 764.986 1019.18 763 1018 33.8049 61.0505 0
15 0.207399 1717.26 2768.44 2804.96 4130.08 1803.5 2490 1977.45 3175.43 754.69 1020.55 754 1017 27.2849 47.1276 0
16 0.26765 2032.73 3764.7 3170.42 5299.85 2787.5 4851 1028.67 1834.39 750.851 1024.87 751.5 1026.5 26.3071 45.4701 0
17 -0.532431 776.294 227.822 1645.6 1232.35 1630.5 1211.5 264.287 83.1949 747.756 1027.01 745 1026.5 27.7611 43.8059 -1.768697497
18 -0.29175 222.656 113.732 960.04 1084.16 958 1086 24.795 51.0414 738.856 1006.54 740 1008 25.9017 43.1207 -0.969172522
19 0.493924 6056.52 18886.3 7726.39 23629.3 8007 24164.5 1054.85 3765.38 748.442 989.564 746 989 31.0659 48.3437 1.640780012
20 -0.24027 5288.31 3041.21 7053.54 4400.25 7072 4358.5 792.827 447.702 749.916 926.955 750 928 26.3453 45.1862 -0.798159663

Total number of rows: 16273

Table truncated, full table size 1978 Kbytes.




Supplementary data files not provided
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