|
| Status |
Public on Mar 02, 2013 |
| Title |
Mg_H3K4Me2_rep1 |
| Sample type |
SRA |
| |
|
| Source name |
mammary gland
|
| Organism |
Mus musculus |
| Characteristics |
strain: CD-1
tissue type: mammary gland
developmental stage: lactation day 8
gender: female
antibody: H3K4me2
antibody vendor: millipore
antibody catalog #: 07-030
antibody lot #: 26335, DAM1479603, DAM1570816
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Illumina standard protocol
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Data processing |
Alignment: Sequence reads were obtained and mapped to the Mouse (July, 2007) genomes using the Illumina Genome Analyzer Pipeline. All reads mapping with two or fewer mismatches were retained.
Peaks: Peak detection was performed with the Model-based Analysis of ChIP-Seq (MACS) algorithm (http://liulab.dfci.harvard.edu/MACS/)
|
| |
|
| Submission date |
Nov 03, 2010 |
| Last update date |
May 15, 2019 |
| Contact name |
LIGUO WANG |
| E-mail(s) |
[email protected]
|
| Organization name |
Mayo Clinic
|
| Department |
Division of Computational Biology
|
| Street address |
200 1st St SW
|
| City |
Rochester |
| State/province |
MN |
| ZIP/Postal code |
55905 |
| Country |
USA |
| |
|
| Platform ID |
GPL9250 |
| Series (1) |
| GSE25105 |
Progressive epigenetic changes in milk protein gene loci during functional differentiation of the mammary gland: ChIP-Seq part I |
|
| Relations |
| SRA |
SRX031071 |
| BioSample |
SAMN00120251 |
