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Sample GSM67735 Query DataSets for GSM67735
Status Public on Aug 08, 2006
Title Minus_LPS4h_Mu11KsubA_rep1
Sample type RNA
 
Source name MRP14(S100A9)-negative-mouse bone-marrow granulocytes (without erythrocytes)
Organism Mus musculus
Characteristics stimulated for 4h with LPS
Extracted molecule total RNA
Extraction protocol lysis in RLT buffer (Qiagen); total-RNA extracted with RNeasy kit (Qiagen)
Label biotin
Label protocol during in-vitro transcription; standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description original experiment name: V17ML4-130701A_TGT1000
Data processing Affymetrix Microarray Suite version 5.0, statistical algorithm, scaling target value 1000
 
Submission date Aug 08, 2005
Last update date Aug 08, 2005
Contact name Martin Eisenacher
E-mail(s) [email protected], [email protected]
URL http://ifg-izkf.uni-muenster.de/
Organization name Westfaelische Wilhelms-Universitaet Muenster
Department Integrierte Funktionelle Genomik (IFG)
Lab Bioinformatik
Street address von-Esmarch-Str. 56
City Muenster
State/province NRW
ZIP/Postal code D-48149
Country Germany
 
Platform ID GPL75
Series (1)
GSE3079 Expression profile of MRP14(S100A9)-positive and -negative mouse bone marrow granulocytes under different stimulations

Data table header descriptions
ID_REF Affymetrix probe set identifier
VALUE MAS5 statistical algorithm-calculated Signal intensity, scaling target value 1000
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the reliability of the measurement (correlated with Absence or Presence of transcript)

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
IL2_at 76.2 A 0.822665
IL10_at 514.7 A 0.327079
GMCSF_at 177 A 0.672921
TNFRII_at 1186.5 P 0.00762
MIP1-B_at 4102.9 P 0.001102
IL4_at 377.2 M 0.050229
IL12_P40_at 145.3 A 0.672921
TNFa_at 2020.7 P 0.000127
TCRa_at 56.3 A 0.973889
AFFX-BioB-5_at 1822.5 P 0.021902
AFFX-BioB-M_at 3424.5 P 0.00007
AFFX-BioB-3_at 1888.2 P 0.000147
AFFX-BioC-5_at 6290.5 P 0.000127
AFFX-BioC-3_at 5312 P 0.000225
AFFX-BioDn-5_at 5257.5 P 0.00011
AFFX-BioDn-3_at 27050.7 P 0.00006
AFFX-CreX-5_at 62803.1 P 0.000066
AFFX-CreX-3_at 55432 P 0.000066
AFFX-BioB-5_st 596.6 A 0.175328
AFFX-BioB-M_st 206.2 A 0.659339

Total number of rows: 6584

Table truncated, full table size 191 Kbytes.




Supplementary data files not provided

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