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Sample GSM67736 Query DataSets for GSM67736
Status Public on Aug 08, 2006
Title Plus_LPS4h_Mu11KsubA_rep1
Sample type RNA
 
Source name MRP14(S100A9)-positive-mouse bone-marrow granulocytes (without erythrocytes)
Organism Mus musculus
Characteristics stimulated for 4h with LPS
Extracted molecule total RNA
Extraction protocol lysis in RLT buffer (Qiagen); total-RNA extracted with RNeasy kit (Qiagen)
Label biotin
Label protocol during in-vitro transcription; standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description original experiment name: V17PL4-130701A_TGT1000
Data processing Affymetrix Microarray Suite version 5.0, statistical algorithm, scaling target value 1000
 
Submission date Aug 08, 2005
Last update date Aug 08, 2005
Contact name Martin Eisenacher
E-mail(s) [email protected], [email protected]
URL http://ifg-izkf.uni-muenster.de/
Organization name Westfaelische Wilhelms-Universitaet Muenster
Department Integrierte Funktionelle Genomik (IFG)
Lab Bioinformatik
Street address von-Esmarch-Str. 56
City Muenster
State/province NRW
ZIP/Postal code D-48149
Country Germany
 
Platform ID GPL75
Series (1)
GSE3079 Expression profile of MRP14(S100A9)-positive and -negative mouse bone marrow granulocytes under different stimulations

Data table header descriptions
ID_REF Affymetrix probe set identifier
VALUE MAS5 statistical algorithm-calculated Signal intensity, scaling target value 1000
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the reliability of the measurement (correlated with Absence or Presence of transcript)

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
IL2_at 95.7 A 0.832931
IL10_at 470.1 A 0.185131
GMCSF_at 383.6 A 0.340661
TNFRII_at 1586.3 P 0.002023
MIP1-B_at 9015.3 P 0.000081
IL4_at 117.6 A 0.48511
IL12_P40_at 91.5 A 0.760937
TNFa_at 3778.4 P 0.000052
TCRa_at 46.9 A 0.986189
AFFX-BioB-5_at 1443.4 P 0.01667
AFFX-BioB-M_at 2303.7 P 0.000081
AFFX-BioB-3_at 1687.6 P 0.004998
AFFX-BioC-5_at 4537.9 P 0.000195
AFFX-BioC-3_at 3139.2 P 0.00039
AFFX-BioDn-5_at 3117.1 P 0.000225
AFFX-BioDn-3_at 24052.5 P 0.00006
AFFX-CreX-5_at 46164.5 P 0.000044
AFFX-CreX-3_at 59263.6 P 0.000066
AFFX-BioB-5_st 309.9 A 0.313723
AFFX-BioB-M_st 489.4 A 0.340661

Total number of rows: 6584

Table truncated, full table size 191 Kbytes.




Supplementary data files not provided

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