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Sample GSM67748 Query DataSets for GSM67748
Status Public on Aug 08, 2006
Title Plus_Kontrolle4h_Mu11KsubA_rep4
Sample type RNA
 
Source name MRP14(S100A9)-positive-mouse bone-marrow granulocytes (without erythrocytes)
Organism Mus musculus
Characteristics not stimulated 4h
Extracted molecule total RNA
Extraction protocol lysis in RLT buffer (Qiagen); total-RNA extracted with RNeasy kit (Qiagen)
Label biotin
Label protocol during in-vitro transcription; standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description original experiment name: V4PK4-260301A_TGT1000
Data processing Affymetrix Microarray Suite version 5.0, statistical algorithm, scaling target value 1000
 
Submission date Aug 08, 2005
Last update date Aug 08, 2005
Contact name Martin Eisenacher
E-mail(s) [email protected], [email protected]
URL http://ifg-izkf.uni-muenster.de/
Organization name Westfaelische Wilhelms-Universitaet Muenster
Department Integrierte Funktionelle Genomik (IFG)
Lab Bioinformatik
Street address von-Esmarch-Str. 56
City Muenster
State/province NRW
ZIP/Postal code D-48149
Country Germany
 
Platform ID GPL75
Series (1)
GSE3079 Expression profile of MRP14(S100A9)-positive and -negative mouse bone marrow granulocytes under different stimulations

Data table header descriptions
ID_REF Affymetrix probe set identifier
VALUE MAS5 statistical algorithm-calculated Signal intensity, scaling target value 1000
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the reliability of the measurement (correlated with Absence or Presence of transcript)

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
IL2_at 248 A 0.62625
IL10_at 70.6 A 0.749204
GMCSF_at 141.5 A 0.772364
TNFRII_at 382 A 0.195266
MIP1-B_at 1961.7 P 0.005565
IL4_at 14.5 A 0.932322
IL12_P40_at 45.4 A 0.976071
TNFa_at 54.8 A 0.772364
TCRa_at 55 A 0.949771
AFFX-BioB-5_at 7114.6 P 0.000662
AFFX-BioB-M_at 12493.4 P 0.000044
AFFX-BioB-3_at 5023.2 P 0.000081
AFFX-BioC-5_at 12065.3 P 0.00007
AFFX-BioC-3_at 6617 P 0.00007
AFFX-BioDn-5_at 10268.2 P 0.000044
AFFX-BioDn-3_at 60616.3 P 0.000078
AFFX-CreX-5_at 88139 P 0.000737
AFFX-CreX-3_at 140993.3 P 0.000244
AFFX-BioB-5_st 435.2 A 0.131361
AFFX-BioB-M_st 900.7 A 0.067678

Total number of rows: 6584

Table truncated, full table size 191 Kbytes.




Supplementary data files not provided

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