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GEO accession:
Sample GSM72226
Query DataSets for GSM72226
Status
Public on Mar 01, 2006
Title
Med13 IGR-6
Sample type
genomic
Channel 1
Source name
CHIP IP med13-6 IGR
Organism
Schizosaccharomyces pombe
Characteristics
IP sample med13-TAP
Extracted molecule
genomic DNA
Label
cy5
Channel 2
Source name
WCE
Organism
Schizosaccharomyces pombe
Characteristics
WCE of Med13-TAP
Extracted molecule
genomic DNA
Label
cy3
Description
IgG beads were used for ChIP of chromatin
extracts from Med7-TAP cells. Cell cultures
were then grown to mid logarithmic growth
phase (5 x106 cells/ml) in rich medium before
fixation and ChIP. The resulting ChIP DNA was
labeled with Cy5. The wCE control ChIP DNA was
labeled with Cy3 and simultaneously hybridized
with the Cy5 labeled DNA to the IGR+ORF
microarrays to produce genome wide mediator
occupancy profile.
Data processing
cy5/cy3
Submission date
Aug 26, 2005
Last update date
Dec 27, 2005
Contact name
Claes M Gustafsson
E-mail(s)
[email protected]
Organization name
Gothenburg University
Department
Department of Medical biochemistry and cell biology
Street address
Medcinaregatan 9A
City
Gothenburg
ZIP/Postal code
405 30
Country
Sweden
Platform ID
GPL2789
Series (1)
GSE3213
Genome-wide occupancy profile of mediator and the srb8-11 module reveals interactions with coding regions.
Data table header descriptions
ID_REF
VALUE
log2 of PRE_VALUE
PRE_VALUE
nomarized IP/WCE Med13 IGR value
Data table
ID_REF
VALUE
PRE_VALUE
1
-2.5649
0.169
3
-0.7686
0.587
5
1.5592
2.947
7
0.4563
1.372
9
0.2951
1.227
11
1.0036
2.005
13
-0.0336
0.977
15
1.3818
2.606
17
-2.8997
0.134
19
-2.0350
0.244
21
0.9358
1.913
23
2.4505
5.466
25
-0.4719
0.721
27
2.4230
5.363
29
-0.7563
0.592
31
1.0151
2.021
33
2.0796
4.227
35
-1.7370
0.3
37
-1.7859
0.29
39
-0.5416
0.687
Total number of rows:
5096
Table truncated, full table size
93 Kbytes
.
Supplementary data files not provided
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