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GEO accession:
Sample GSM72239
Query DataSets for GSM72239
Status
Public on Mar 01, 2006
Title
Med13 ORF-3
Sample type
genomic
Channel 1
Source name
CHIP IP Med13-3 ORF
Organism
Schizosaccharomyces pombe
Characteristics
IP sample med13-TAP
Extracted molecule
genomic DNA
Label
cy5
Channel 2
Source name
WCE
Organism
Schizosaccharomyces pombe
Characteristics
WCE of Med13-TAP
Extracted molecule
genomic DNA
Label
cy3
Description
IgG beads were used for ChIP of chromatin extracts from Med13-TAP cells. Cell cultures were then grown to mid logarithmic growth phase (5 x106 cells/ml) in rich medium before fixation and ChIP. The resulting ChIP DNA was
Data processing
cy5/cy3
Submission date
Aug 26, 2005
Last update date
Dec 27, 2005
Contact name
Claes M Gustafsson
E-mail(s)
[email protected]
Organization name
Gothenburg University
Department
Department of Medical biochemistry and cell biology
Street address
Medcinaregatan 9A
City
Gothenburg
ZIP/Postal code
405 30
Country
Sweden
Platform ID
GPL2789
Series (1)
GSE3213
Genome-wide occupancy profile of mediator and the srb8-11 module reveals interactions with coding regions.
Data table header descriptions
ID_REF
VALUE
log2 of PRE_VALUE
PRE_VALUE
nomarized IP/WCE value
Data table
ID_REF
VALUE
PRE_VALUE
76
1.2308
2.347
78
-3.0000
0.125
80
-2.1714
0.222
82
84
0.2412
1.182
86
88
90
0
91
0
92
0
93
0
94
0
95
0
96
0
97
0
98
-0.9351
0.523
100
-0.6850
0.622
102
-1.9828
0.253
104
1.1104
2.159
106
1.9437
3.847
Total number of rows:
6469
Table truncated, full table size
104 Kbytes
.
Supplementary data files not provided
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