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Sample GSM753001 Query DataSets for GSM753001
Status Public on Nov 05, 2011
Title L1685
Sample type genomic
 
Channel 1
Source name ollier
Organism Homo sapiens
Characteristics gender: female
Treatment protocol DNA was isolated from frozen tumor sections
Extracted molecule genomic DNA
Extraction protocol DNA was isolated using a Wizard® Genomic DNA Purification Kit from Promega following manufacturer's instructions
Label Cy3
Label protocol Samples were labeled according to the Agilent Oligonucleotide Array-based CGH for Genomic DNA Analysis manual for 8x15k arrays
 
Channel 2
Source name Control genomic DNA (commercial source)
Organism Homo sapiens
Characteristics gender: male
Treatment protocol DNA was isolated from frozen tumor sections
Extracted molecule genomic DNA
Extraction protocol DNA was isolated using a Wizard® Genomic DNA Purification Kit from Promega following manufacturer's instructions
Label Cy5
Label protocol Samples were labeled according to the Agilent Oligonucleotide Array-based CGH for Genomic DNA Analysis manual for 8x15k arrays
 
 
Hybridization protocol Samples were hybridised according to the Agilent Oligonucleotide Array-based CGH for Genomic DNA Analysis manual for 8x15k arrays
Scan protocol Scanned on an Agilent G2565AA scanner.
Data processing Agilent Feature Extraction Software (v 10.7.1.1) was used for background subtraction and Linear normalization.
 
Submission date Jul 01, 2011
Last update date Nov 05, 2011
Contact name Twinkal Chandubhai Pansuriya
E-mail(s) [email protected]
Phone 0031715266528
Organization name LUMC
Department Pathology
Street address Albinusdreef 2
City Leiden
State/province Zuid-Holland
ZIP/Postal code 2333ZA
Country Netherlands
 
Platform ID GPL13754
Series (2)
GSE30354 Examination of Ollier Disease and Maffucci Syndrome using IDH Tiling Array
GSE30844 Somatic mosaic IDH1 and IDH2 mutations are associated with enchondroma and spindle cell haemangioma in Ollier disease and Maffucci syndrome

Data table header descriptions
ID_REF
VALUE normalized log10 ratio Cy5/Cy3

Data table
ID_REF VALUE
1 1.163604037e-001
2 0.000000000e+000
3 0.000000000e+000
4 -1.299865604e-001
5 1.534019355e-001
6 -6.038848627e-002
7 -1.046121894e-002
8 -4.510266200e-002
9 3.249097813e-002
11 -2.752933148e-001
12 2.980194515e-002
13 -1.610196902e-001
14 1.425886492e-001
15 1.435159724e-001
16 -8.143707200e-002
17 -3.008407540e-002
18 5.865757259e-002
19 1.404685217e-001
20 5.060289555e-002
21 -7.775754911e-003

Total number of rows: 14860

Table truncated, full table size 330 Kbytes.




Supplementary file Size Download File type/resource
GSM753001_L1685_29042011_253244710002_S02_CGH_107_Sep09_2_4.txt.gz 1.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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