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Sample GSM792700 Query DataSets for GSM792700
Status Public on Oct 03, 2011
Title Brain Stem 3 copies biological 1 technical 1
Sample type RNA
 
Source name Brain Stem Dosage 3
Organism Mus musculus
Characteristics mouse id: 102
chromosome_dosage: dp/+
brain region: Brain Stem
strain: F1 C57BL/6N: 129Sv
gender: male
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol The samples were amplified and converted to cDNA using the Whole Transcript Expression kit (Ambion), fragmented and labeled using the Whole Transcript Sense Target Labeling Assay (Affymetrix)
 
Hybridization protocol The arrays were hybridized and washed using the FS450 fluidics station (Affymetrix)
Scan protocol scanned using the GCS300 7G GeneChip Scanner (Affymetrix)
Description Mus Musculus Brain Stem Dosage 3
Data processing Data was extracted using Expression Console (Affymetrix) with the RMA sketch workflow for gene level analysis
 
Submission date Sep 09, 2011
Last update date Oct 03, 2011
Contact name Guy Horev
Organization name Cold Spring Harbor Laboratory
Street address 1 Bungtown Road
City Cold Spring Harbor
State/province New York
ZIP/Postal code 11743
Country USA
 
Platform ID GPL6246
Series (1)
GSE32012 Dosage-dependent phenotypes in models of 16p11.2 lesions found in autism

Data table header descriptions
ID_REF
VALUE Log2 values of the intensity

Data table
ID_REF VALUE
10344614 7.352034
10344616 3.843351
10344620 5.258576
10344622 8.203663
10344624 10.18808
10344633 10.43811
10344637 10.28859
10344653 8.265007
10344658 9.788324
10344674 4.515836
10344679 9.067776
10344707 10.15736
10344713 9.497172
10344715 5.028461
10344717 4.190783
10344719 6.477932
10344721 3.705791
10344723 8.012831
10344725 9.77812
10344741 9.945346

Total number of rows: 35556

Table truncated, full table size 621 Kbytes.




Supplementary file Size Download File type/resource
GSM792700_AMGH100609_WT-102-BSII_122309.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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