|
| Status |
Public on Feb 27, 2024 |
| Title |
TF ChIP-seq from whole organism (ENCLB209GKN) |
| Sample type |
SRA |
| |
|
| Source name |
Caenorhabditis elegans strain OP179 (unc-119(ed3) III; wgIs179) mixed sex young adult insertion targeting C. elegans snpc-4
|
| Organism |
Caenorhabditis elegans |
| Characteristics |
antibody: snpc-4
cell_type: whole organism
biomaterial_type: whole organisms
biosample encode accession: ENCBS888TAD (SAMN40085833)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS888TAD
Sex: pooled male and female
dev stage: young adult
age: unknown
donor_id: ENCDO767QYK
lab: Michael Snyder, Stanford
source: CGC
link: ENCBS888TAD at ENCODE; https://www.encodeproject.org/ENCBS888TAD/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
not provided
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR395BWO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-snpc-4 in young adult worms.
experiment encode accession: ENCSR395BWO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR844JGM
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB209GKN
size range: 150-350
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Feb 25, 2024 |
| Last update date |
Feb 27, 2024 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
[email protected]
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL13776 |
| Series (1) |
| GSE257921 |
TF ChIP-seq from whole organism (ENCSR395BWO) |
|
| Relations |
| BioSample |
SAMN40085833 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM8108851_ENCFF032JGI_peaks_and_background_as_input_for_IDR_ce10.bed.gz |
750.6 Kb |
(ftp)(http) |
BED |
| GSM8108851_ENCFF139KPY_signal_of_unique_reads_ce10.bigWig |
9.6 Mb |
(ftp)(http) |
BIGWIG |
| GSM8108851_ENCFF183IWT_control_normalized_signal_ce10.bigWig |
9.8 Mb |
(ftp)(http) |
BIGWIG |
| GSM8108851_ENCFF391QYF_control_normalized_signal_ce11.bigWig |
9.8 Mb |
(ftp)(http) |
BIGWIG |
| GSM8108851_ENCFF429JMQ_peaks_and_background_as_input_for_IDR_ce11.bigBed |
1.2 Mb |
(ftp)(http) |
BIGBED |
| GSM8108851_ENCFF456ZEG_peaks_and_background_as_input_for_IDR_ce10.bigBed |
1.2 Mb |
(ftp)(http) |
BIGBED |
| GSM8108851_ENCFF534FKI_signal_of_unique_reads_ce11.bigWig |
9.7 Mb |
(ftp)(http) |
BIGWIG |
| GSM8108851_ENCFF732XSA_read-depth_normalized_signal_ce11.bigWig |
9.7 Mb |
(ftp)(http) |
BIGWIG |
| GSM8108851_ENCFF933AHD_peaks_and_background_as_input_for_IDR_ce11.bed.gz |
750.7 Kb |
(ftp)(http) |
BED |
| GSM8108851_ENCFF968FOS_read-depth_normalized_signal_ce10.bigWig |
9.6 Mb |
(ftp)(http) |
BIGWIG |
| GSM8108851_ENCLB209GKN_README.txt.gz |
1.8 Kb |
(ftp)(http) |
TXT |
| Raw data are available in SRA |
