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Sample GSM825577 Query DataSets for GSM825577
Status Public on Apr 21, 2012
Title Liver_ZT1_Control_3
Sample type RNA
 
Source name Liver
Organism Mus musculus
Characteristics gender: Male
strain: Bl6J
age: 10-12 weeks
tissue: Liver
treatment: control
time point: 1
Treatment protocol SR mice were kept awake using 'gentle handing' method from ZT0 until ZT6 for 5 consecutive days, left to sleep ad libitum for 2 days, and sleep restrictiong was repeated for another 5 days. Control mice were kepts undisturbed in parallel.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Trizol Reagent (Invitrogen)
Label biotin
Label protocol Labelling was with GeneChip WT Terminal Labeling Kit (Affymetrix)
 
Hybridization protocol 17 hours, 60 rpm, 45C
Scan protocol GeneChip Scanner 3000
Description Liver_Probe38_(MoGene-1_0-st-v1).CEL
Data processing Data was extracted from CEL files using dChip. Values are MM/PM normalized signal estimates from dChip software.
 
Submission date Nov 01, 2011
Last update date Apr 21, 2012
Contact name Johanna Barclay
E-mail(s) [email protected]
Organization name MPI-BPC
Street address Am Fassburg 11
City Göttingen
ZIP/Postal code 37077
Country Germany
 
Platform ID GPL6246
Series (1)
GSE33381 The effect of sleep restriction on transcriptome rhythmicity in mice

Data table header descriptions
ID_REF
VALUE dCHIP signal
p value

Data table
ID_REF VALUE p value
10371959 203.06 0.00883
10386207 57 0.00042
10389522 1072.64 0.00000
10445141 26.27 0.04078
10468089 460.42 0.02622
10490294 1738.22 0.00000
10563110 44.74 0.00000
10347748 480.85 0.00976
10354542 263.15 0.05358
10366848 853.92 0.04472
10370708 442.57 0.03922
10386992 21.18 0.05563
10394527 97.62 0.01641
10402195 79.4 0.02646
10405785 202.95 0.02660
10406364 70.95 0.04000
10419779 135.02 0.06434
10440593 92.11 0.04971
10474335 121.3 0.01640
10487622 266.21 0.04572

Total number of rows: 28815

Table truncated, full table size 659 Kbytes.




Supplementary file Size Download File type/resource
GSM825577.CEL.gz 3.9 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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