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Sample GSM825592 Query DataSets for GSM825592
Status Public on Apr 21, 2012
Title Liver_ZT7_SR_3
Sample type RNA
 
Source name Liver
Organism Mus musculus
Characteristics gender: Male
strain: Bl6J
age: 10-12 weeks
tissue: Liver
treatment: sleep restricted
time point: 7
Treatment protocol SR mice were kept awake using 'gentle handing' method from ZT0 until ZT6 for 5 consecutive days, left to sleep ad libitum for 2 days, and sleep restrictiong was repeated for another 5 days. Control mice were kepts undisturbed in parallel.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Trizol Reagent (Invitrogen)
Label biotin
Label protocol Labelling was with GeneChip WT Terminal Labeling Kit (Affymetrix)
 
Hybridization protocol 17 hours, 60 rpm, 45C
Scan protocol GeneChip Scanner 3000
Description Liver_Probe10_(MoGene-1_0-st-v1).CEL
Data processing Data was extracted from CEL files using dChip. Values are MM/PM normalized signal estimates from dChip software.
 
Submission date Nov 01, 2011
Last update date Apr 21, 2012
Contact name Johanna Barclay
E-mail(s) [email protected]
Organization name MPI-BPC
Street address Am Fassburg 11
City Göttingen
ZIP/Postal code 37077
Country Germany
 
Platform ID GPL6246
Series (1)
GSE33381 The effect of sleep restriction on transcriptome rhythmicity in mice

Data table header descriptions
ID_REF
VALUE dCHIP signal
p value

Data table
ID_REF VALUE p value
10371959 193.16 0.0127
10386207 55.44 0.0079
10389522 1858.32 0.0000
10445141 29.89 0.0008
10468089 551.8 0.0341
10490294 1579.73 0.0000
10563110 82.3 0.0000
10347748 343.57 0.0134
10354542 234.42 0.0553
10366848 966.8 0.0565
10370708 379.33 0.0698
10386992 22.26 0.0913
10394527 119.47 0.0011
10402195 77.33 0.0724
10405785 173.46 0.0354
10406364 64.28 0.0444
10419779 129.58 0.0454
10440593 110.07 0.0218
10474335 138.55 0.1463
10487622 378.66 0.0456

Total number of rows: 28815

Table truncated, full table size 631 Kbytes.




Supplementary file Size Download File type/resource
GSM825592.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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