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Sample GSM825600 Query DataSets for GSM825600
Status Public on Apr 21, 2012
Title WAT_ZT1_Control_2
Sample type RNA
 
Source name epididymal WAT
Organism Mus musculus
Characteristics gender: Male
strain: Bl6J
age: 10-12 weeks
tissue: epididymal WAT
treatment: control
time point: 1
Treatment protocol SR mice were kept awake using 'gentle handing' method from ZT0 until ZT6 for 5 consecutive days, left to sleep ad libitum for 2 days, and sleep restrictiong was repeated for another 5 days. Control mice were kepts undisturbed in parallel.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Trizol Reagent (Invitrogen)
Label biotin
Label protocol Labelling was with GeneChip WT Terminal Labeling Kit (Affymetrix)
 
Hybridization protocol 17 hours, 60 rpm, 45C
Scan protocol GeneChip Scanner 3000
Description fat_Probe50_(MoGene-1_0-st-v1).CEL
Data processing Data was extracted from CEL files using dChip. Values are MM/PM normalized signal estimates from dChip software.
 
Submission date Nov 01, 2011
Last update date Apr 21, 2012
Contact name Johanna Barclay
E-mail(s) [email protected]
Organization name MPI-BPC
Street address Am Fassburg 11
City Göttingen
ZIP/Postal code 37077
Country Germany
 
Platform ID GPL6246
Series (1)
GSE33381 The effect of sleep restriction on transcriptome rhythmicity in mice

Data table header descriptions
ID_REF
VALUE dCHIP signal

Data table
ID_REF VALUE
10344614 138.35
10344616 11.97
10344618 10.10
10344620 25.27
10344622 73.38
10344624 1056.56
10344633 587.80
10344637 533.38
10344653 26.50
10344658 282.04
10344674 18.92
10344679 28.06
10344705 15.23
10344707 2026.39
10344713 5558.98
10344715 21.75
10344717 10.57
10344719 40.74
10344721 2.81
10344723 128.40

Total number of rows: 28815

Table truncated, full table size 433 Kbytes.




Supplementary file Size Download File type/resource
GSM825600.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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