NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM825609 Query DataSets for GSM825609
Status Public on Apr 21, 2012
Title WAT_ZT19_Control_2
Sample type RNA
 
Source name epididymal WAT
Organism Mus musculus
Characteristics gender: Male
strain: Bl6J
age: 10-12 weeks
tissue: epididymal WAT
treatment: control
time point: 19
Treatment protocol SR mice were kept awake using 'gentle handing' method from ZT0 until ZT6 for 5 consecutive days, left to sleep ad libitum for 2 days, and sleep restrictiong was repeated for another 5 days. Control mice were kepts undisturbed in parallel.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Trizol Reagent (Invitrogen)
Label biotin
Label protocol Labelling was with GeneChip WT Terminal Labeling Kit (Affymetrix)
 
Hybridization protocol 17 hours, 60 rpm, 45C
Scan protocol GeneChip Scanner 3000
Description fat_Probe59_(MoGene-1_0-st-v1).CEL
Data processing Data was extracted from CEL files using dChip. Values are MM/PM normalized signal estimates from dChip software.
 
Submission date Nov 01, 2011
Last update date Apr 21, 2012
Contact name Johanna Barclay
E-mail(s) [email protected]
Organization name MPI-BPC
Street address Am Fassburg 11
City Göttingen
ZIP/Postal code 37077
Country Germany
 
Platform ID GPL6246
Series (1)
GSE33381 The effect of sleep restriction on transcriptome rhythmicity in mice

Data table header descriptions
ID_REF
VALUE dCHIP signal

Data table
ID_REF VALUE
10344614 89.72
10344616 5.14
10344618 20.20
10344620 30.30
10344622 24.08
10344624 132.38
10344633 956.60
10344637 867.68
10344653 184.35
10344658 410.62
10344674 9.45
10344679 68.05
10344705 18.23
10344707 1006.11
10344713 397.81
10344715 24.02
10344717 8.39
10344719 45.29
10344721 1.48
10344723 136.12

Total number of rows: 28815

Table truncated, full table size 434 Kbytes.




Supplementary file Size Download File type/resource
GSM825609.CEL.gz 3.9 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap