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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 17, 2024 |
| Title |
wd-1,treated,48h,3 |
| Sample type |
SRA |
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| Source name |
leaf
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| Organism |
Oryza sativa Japonica Group |
| Characteristics |
tissue: leaf
cell line: MESOPHYLL cell
cell type: MESOPHYLL cell
genotype: knockdown
treatment: 48h with Guy11
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| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was isolated according to the protocol of Trizol Reagent kit and purification (Invitrogen)
The experimental samples were constructed and sequenced by cDNA library of Beijing Novogene using Novaseq 6000 platform.
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
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| Data processing |
Fastp( version 0.19.7 ) was used to quality control the raw data to obtain clean reads
Assembly: the indica reference genome (Oryza_indica.ASM465v1.dna.toplevel. fa),the Japonica reference genome(Oryza sativa Japonica IRGSP-1.0)
Supplementary files format and content: tab-delimited text files include RPKM values for each Sample
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| Submission date |
Jul 12, 2024 |
| Last update date |
Jul 17, 2024 |
| Contact name |
shaochun Liu |
| E-mail(s) |
[email protected]
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| Organization name |
Jiangxi Agricultural University
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| Street address |
Jiaoqiao town
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| City |
Nanchang |
| ZIP/Postal code |
330045 |
| Country |
China |
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| Platform ID |
GPL27860 |
| Series (1) |
| GSE272164 |
Alternative polyadenylation contributes to the Resistance of the Jiangxi hybrid rice to blast rice using transcriptomics and metabolomics |
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| Relations |
| BioSample |
SAMN42469123 |
| SRA |
SRX25308015 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
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