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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 09, 2024 |
| Title |
pDEMYELINsMMrCorpusCallosumJiM118d201110rerun |
| Sample type |
SRA |
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| Source name |
corpus callosum
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| Organism |
Mus musculus |
| Characteristics |
tissue: corpus callosum
cell line: N/A
cell type: Brain cells
genotype: C57BL/6J
treatment: Stereotaxic injection of LPC or saline control
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| Treatment protocol |
saline or LPC
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| Growth protocol |
N/A
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| Extracted molecule |
polyA RNA |
| Extraction protocol |
Stereotaxic surgery and injection of LPC or saline into corpus callosum. Brains were isolated and frozen, lesions were microdissected
10x Genomics v3.1
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| Library strategy |
OTHER |
| Library source |
transcriptomic |
| Library selection |
other |
| Instrument model |
Illumina NovaSeq 6000 |
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| Description |
10x Genomics v3.1
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| Data processing |
Cellranger
Assembly: GRCm38.102-5.0.1
Supplementary files format and content: h5ad, processed single cell counts matrices
Supplementary files format and content: h5Seurat, processed single cell counts matrices
Library strategy: Fragmentation and A-tailing
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| Submission date |
Sep 06, 2024 |
| Last update date |
Sep 09, 2024 |
| Contact name |
Evan Macosko |
| E-mail(s) |
[email protected]
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| Organization name |
Broad Institute
|
| Street address |
75 Ames St
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| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02142 |
| Country |
USA |
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| Platform ID |
GPL24247 |
| Series (1) |
| GSE276570 |
Single-cell profiling of remyelination in the LPC model |
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| Relations |
| BioSample |
SAMN43525445 |
| SRA |
SRX25999317 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
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