|
| Status |
Public on Nov 01, 2024 |
| Title |
MIA-039 |
| Sample type |
SRA |
| |
|
| Source name |
Minimally invasive adenocarcinoma of the lung
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Minimally invasive adenocarcinoma of the lung
|
| Extracted molecule |
total RNA |
| Extraction protocol |
FFPE slides were mounted onto Visium slides using CytAssist
Libraries were constructed using the 10x Visium from FFPE supplied reagents
|
| |
|
| Library strategy |
OTHER |
| Library source |
transcriptomic |
| Library selection |
other |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
Raw reads were processed using SpaceRanger version 2.0.0.
Assembly: GRCh38
Supplementary files format and content: HDF5 file containing per-molecule information for all molecules and H&E staining image.
Library strategy: Spatial transcriptomics
|
| |
|
| Submission date |
Sep 14, 2024 |
| Last update date |
Nov 01, 2024 |
| Contact name |
Chia-Lang Hsu |
| E-mail(s) |
[email protected]
|
| Organization name |
National Taiwan University Hospital
|
| Department |
Department of Medical Research
|
| Street address |
No. 7, Zhongshan S. Rd.
|
| City |
Taipei |
| ZIP/Postal code |
100 |
| Country |
Taiwan |
| |
|
| Platform ID |
GPL24676 |
| Series (1) |
| GSE277206 |
Multi-omics analysis of molecular changes during early progression of precancerous lesion to lung adenocarcinoma in never-smokers |
|
| Relations |
| BioSample |
SAMN43772315 |
| SRA |
SRX26087700 |
