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Sample GSM8591042 Query DataSets for GSM8591042
Status Public on Nov 21, 2024
Title AS-779389-LR-60677
Sample type SRA
 
Source name labyrinth-EC-placenta-rep-4
Organism Mus musculus
Characteristics tissue: Placenta
age: E16.5
cell type: Endothelial cells
genotype: WT
Extracted molecule total RNA
Extraction protocol Whole transcriptome scRNA-seq was performed following an adapted SMARTseq2.5 protocol.
 
Library strategy RNA-Seq
Library source transcriptomic single cell
Library selection cDNA
Instrument model NextSeq 550
 
Description AS-779389-LR-60677
Data processing scRNA-sew: Raw sequencing data were demultiplexed and FASTQ files were generated using bcl2fastq software (Illumina, v2.20.0.422). Using salmon, FASTQ files were mapped to the GRCm39 mouse reference genome and count matrices were constructed with the R package tximport.
Assembly: GRCm39
Supplementary files format and content: CSV files containing the count matrix (count_matrix.csv) and the Seurat object metadata (GEO_metadata.csv)
 
Submission date Oct 23, 2024
Last update date Nov 21, 2024
Contact name Stephanie Gehrs
Organization name DKFZ
Street address Im Neuenheimer Feld
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL21626
Series (1)
GSE280168 The spatial zonation of the placental vasculature is specified by epigenetic mechanisms
Relations
BioSample SAMN44407968
SRA SRX26478596

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA

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