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Series GSE280168 Query DataSets for GSE280168
Status Public on Nov 21, 2024
Title The spatial zonation of the placental vasculature is specified by epigenetic mechanisms
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The labyrinthian fetoplacental capillary network is of vital importance for proper nourishment of the developing embryo. An inadequate function of the maternal-fetal circulation has emerged as one of the primary causes of placental insufficiency. Here, we show that the spatial zonation of the placental labyrinth vasculature is controlled by flow-regulated epigenetic mechanisms. The spatial and temporal analysis of gene transcription revealed a gradual change in the expression of epigenetic enzymes with the de novo DNA methyltransferase 3a (DNMT3A) as primary enzyme introducing DNA methylation in cells of the vascular system. Loss of Dnmt3a resulted in DNA hypomethylation and disturbance of the spatial-zonated placental gene expression. The resulting global DNA hypomethylation impaired the angiogenic capacity of endothelial cells. Global as well as endothelium-predominant deletion of Dnmt3a resulted in impaired placental vascularization and fetal growth retardation. A meta-analysis of human placental endothelial cell gene expression identified an association between preeclampsia and reduction of DNMT3A. Collectively, our study identified DMNT3A as critical methylome-regulator of placental endothelial cell gene expression and function with clinical implications for the pathogenesis of placental dysfunction, as it occurs during preeclampsia or fetal growth retardation.
 
Overall design We performed single-cell RNA-seq on labyrinth endothelial cells (EC) dissected from four litter-matched E16.5 wildtype placentas.
 
Contributor(s) Gehrs S, Augustin HG
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Submission date Oct 23, 2024
Last update date Nov 21, 2024
Contact name Stephanie Gehrs
Organization name DKFZ
Street address Im Neuenheimer Feld
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platforms (1)
GPL21626 NextSeq 550 (Mus musculus)
Samples (383)
GSM8590691 AS-778673-LR-60677
GSM8590692 AS-778691-LR-60677
GSM8590693 AS-778693-LR-60677
Relations
BioProject PRJNA1176678

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE280168_GEO_metadata.csv.gz 14.8 Kb (ftp)(http) CSV
GSE280168_count_matrix.csv.gz 4.0 Mb (ftp)(http) CSV
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Raw data are available in SRA

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