GEO help: Mouse over screen elements for information.
Status
Public on Dec 09, 2005
Title
OH3, chip MG_U74Bv2
Sample type
RNA
Source name
Mesenchymal cells, Limb bud
Organism
Mus musculus Characteristics
Strain: CD-1
Treatment protocol
Assays to confirm viability: Cells were allowed to differentiate <i>in vitro</i> into chondrocytes
Extracted molecule
total RNA
Extraction protocol
RNA prep method: RNeasy
Label
Biotin
Description
This sample was analyzed as part of the Stem Cell Genomics Project (http://www.scgp.ca:8080/StemBase/ ). The biological material was submitted to the Ontario Genomics Innovation Centre (http://www.ottawagenomecenter.ca/ ) by Dr. T. Michael Underhill ([email protected] ; 1400 Western Road) for analysis.http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=30 http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=30#SAMPLE_30
Data processing
Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06
Submission date
Dec 07, 2005
Last update date
Jan 19, 2006
Organization
Ottawa Hospital Research Institute
Phone
(613) 737-8899 -73255
Department
Cellular and Molecular Medicine
Lab
Ottawa Bioinformatics Core Facility
Street address
501 Smyth Rd.
City
Ottawa
State/province
ON
ZIP/Postal code
K1H 8L6
Country
Canada
Platform ID
GPL82 Series (1)
GSE3770 Temporal Analysis of Differentiating Limb Bud Mesenchymal Cell Gene Expression
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript. Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06.
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
256.261
A
0.794268
AFFX-MurIL10_at
675.985
A
0.52976
AFFX-MurIL4_at
87.8551
A
0.891021
AFFX-MurFAS_at
648.763
A
0.300606
AFFX-BioB-5_at
6327.34
P
0.00179591
AFFX-BioB-M_at
12651.4
P
0.00010954
AFFX-BioB-3_at
6450.07
P
0.000581214
AFFX-BioC-5_at
18967.2
P
9.4506e-05
AFFX-BioC-3_at
16119
P
6.02111e-05
AFFX-BioDn-5_at
18973.6
P
9.4506e-05
AFFX-BioDn-3_at
94122.5
P
8.14279e-05
AFFX-CreX-5_at
177536
P
4.42873e-05
AFFX-CreX-3_at
240911
P
4.42873e-05
AFFX-BioB-5_st
217.37
A
0.712257
AFFX-BioB-M_st
415.893
A
0.672921
AFFX-BioB-3_st
539.292
A
0.737173
AFFX-BioC-5_st
254.014
A
0.876428
AFFX-BioC-3_st
145.501
A
0.852061
AFFX-BioDn-5_st
2392.02
A
0.0956669
AFFX-BioDn-3_st
3709.65
A
0.0726999
12477 360 Kbytes .Supplementary file Size Download File type/resource GSM86508.CEL.gz
2.8 Mb
(ftp) (http) CEL
GSM86508.EXP.gz
513 b
(ftp) (http) EXP
