GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM9694

Query DataSets for GSM9694

Status

Public on Aug 06, 2004

Title

nl012

Sample type

RNA

Source name

primary acute lymphoblastic leukemia cells

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:136, Count:32
Corner- Avg:6835, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:12.196150,SFGene:All
Background:Avg:45.48,Stdev:1.26,Max:48.0,Min:42.3
Noise:Avg:1.96,Stdev:0.09,Max:2.3,Min:1.7
RawQ:2.11
Keywords = ALL
Lot batch =

Submission date

Sep 05, 2003

Last update date

May 28, 2005

Contact name

William E Evans

E-mail(s)

[email protected]

Phone

901-495-4995

Fax

901-495-6869

URL

http://www.stjude.org/leukemia/bio_evans.htm

Organization name

St.Jude Children's Research Hospital

Department

Pharmaceutical Sciences

Lab

Evans

Street address

332 N. Lauderdale St.

City

Memphis

State/province

ZIP/Postal code

38105

Country

USA

Platform ID

GPL96

Series (8)

More...

GSE635	Identification of novel genomic determinants of cellular drug resistance in acute lymphoblastic leukemia.
GSE643	ASP sensitive all ALL
GSE646	PRED sensitive all ALL

Data table header descriptions
ID_REF	As defined by Affymetrix, these are the probe set identifiers, each of which is unique to a specific probe set defining a specific region of a single gene or set.
VALUE	This is the final calculated meauremeent for each probe set identifer that has been made comparable, through scaling or normalization, accross all samples and rows.
DETECTION P-VALUE	Defines the confidence in the calculated signal accurately reflecting the expression level of the specific gene or est that the probe set identifies.

Data table
ID_REF	VALUE	DETECTION P-VALUE
1007_s_at	650.5	0.003585
1053_at	195.2	0.107301
117_at	142.2	0.031336
121_at	1232.2	0.004863
1255_g_at	182.5	0.150527
1294_at	494.8	0.005643
1316_at	132.0	0.009985
1320_at	27.0	0.679170
1405_i_at	211.7	0.004591
1431_at	18.4	0.500000
1438_at	609.7	0.013092
1487_at	608.5	0.081337
1494_f_at	255.2	0.066865
1598_g_at	743.0	0.117160
160020_at	665.2	0.043968
1729_at	227.1	0.175989
1773_at	265.2	0.250724
177_at	134.3	0.089405
179_at	1238.9	0.011447
1861_at	205.0	0.117160

Total number of rows: 22283

Table truncated, full table size 559 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM9694.CEL.gz	3.2 Mb	(ftp)(http)	CEL