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| Status |
Public on Dec 31, 2006 |
| Title |
control day 5 (#9) vs. 400 mg/kg day 5 BECM (#54) |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
control day 5 (#9)
|
| Organism |
Rattus norvegicus |
| Characteristics |
Total cardiac RNA from control day 5 (#9)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
QIAGEN Rneasy kit (QIAGEN, Valencia, CA)
|
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
400 mg/kg day 5 BECM (#54)
|
| Organism |
Rattus norvegicus |
| Characteristics |
Total cardiac RNA from 400 mg/kg day 5 BECM (#54)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
QIAGEN Rneasy kit (QIAGEN, Valencia, CA)
|
| Label |
Cy5
|
| |
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| |
| Description |
control day 5 (#9) vs. 400 mg/kg day 5 BECM (#54)
|
| Data processing |
Loess normalized, and combined dye flip replicates with Rosetta Resolver error weighted model
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| |
|
| Submission date |
Feb 16, 2006 |
| Last update date |
Feb 17, 2006 |
| Contact name |
Joel Parker |
| E-mail(s) |
[email protected]
|
| Organization name |
Constella Group
|
| Street address |
2605 Meridian Parkway
|
| City |
Durham |
| State/province |
NC |
| ZIP/Postal code |
27713 |
| Country |
USA |
| |
|
| Platform ID |
GPL890 |
| Series (1) |
| GSE4254 |
Bis(2-chloroethoxy)methane-induced heart toxicity and recovery in male fisher rats |
|
| Data table header descriptions |
| ID_REF |
probeset IDs from the Agilent Rat Oligo (4130A) array |
| VALUE |
log2 of PRE_VALUE |
| PRE_VALUE |
ratios: Loess normalized, and combined dye flip replicates with Rosetta Resolver |
| Data table |
| ID_REF |
VALUE |
PRE_VALUE |
| 3 |
-0.0685 |
0.95361 |
| 4 |
0.1143 |
1.08248 |
| 5 |
-0.2138 |
0.86225 |
| 6 |
-0.2359 |
0.84913 |
| 8 |
-0.2943 |
0.81546 |
| 9 |
-1.4672 |
0.36169 |
| 10 |
-0.4773 |
0.71832 |
| 11 |
-0.7739 |
0.58484 |
| 12 |
-0.2117 |
0.86351 |
| 13 |
0.0669 |
1.04749 |
| 15 |
-0.1029 |
0.93119 |
| 16 |
-0.0578 |
0.96074 |
| 17 |
-0.1981 |
0.87171 |
| 18 |
0.0435 |
1.03058 |
| 19 |
0.2310 |
1.17365 |
| 20 |
-0.9260 |
0.52632 |
| 22 |
0.2769 |
1.21155 |
| 23 |
-0.3540 |
0.78242 |
| 24 |
-0.5707 |
0.67331 |
| 25 |
-0.2245 |
0.85592 |
Total number of rows: 20500
Table truncated, full table size 418 Kbytes.
| Supplementary data files not provided |
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