NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM97359 Query DataSets for GSM97359
Status Public on Oct 09, 2007
Title Liver_healthy_cow_early postpartum_7105Cy3
Sample type RNA
 
Channel 1
Source name reference RNA labelled with Cy5
Organism Bos taurus
Characteristics RNA pool of bovine tissues
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Liver RNA labelled with Cy3
Organism Bos taurus
Characteristics Liver RNA
Extracted molecule total RNA
Label Cy3
 
 
Description Cow fed ad libitum early postpartum. Liver RNA was cohybridized with RNA from a pool of bovine tissues.
Data processing loess normalization, log2 transformation
 
Submission date Feb 17, 2006
Last update date Oct 08, 2007
Contact name Juan J. Loor
E-mail(s) [email protected]
Phone 217-244-5957
Organization name University of Illinois
Department Animal Sciences
Lab Mammalian NutriPhysioGenomics
Street address 1207 West Gregory Drive
City Urbana
State/province IL
ZIP/Postal code 61801
Country USA
 
Platform ID GPL2853
Series (1)
GSE4304 Nutrition-induced ketosis alters metabolic and signaling gene networks in liver of periparturient dairy cows

Data table header descriptions
ID_REF
VALUE log2 ratio of median defined by CH1/CH2 (not normalized)
CH1_median CH1 (F635) median fluorescence intensity
CH1_MEAN CH1 (F635) mean fluorescence intensity
CH1_SD CH1 (F635) fluorescence intensity standard deviation
CH1_BKD_Median CH1 (F635) background median fluorescence intensity
CH1_BKD_MEAN CH1 (F635) background mean fluorescence intensity
CH1_BKD_SD CH1 (F635) background fluorescence intensity standard deviation
% > CH1_BKD_+2SD % of feature pixels greater than 2 standard deviations over the background
CH2_median CH2 (F532) median fluorescence intensity
CH2_MEAN CH2 (F532) mean fluorescence intensity
CH2_SD CH2 (F532) fluorescence intensity standard deviation
CH2_BKD_Median CH2 (F532) background median fluorescence intensity
CH2_BKD_MEAN CH2 (F532) background mean fluorescence intensity
CH2_BKD_SD CH2 (F532) background fluorescence intensity standard deviation
% > CH2_BKD_+2SD % of feature pixels greater than 2 standard deviations over the background
Ratio of Medians (635/532) Unnormalized ratio of medians defined by CH1/CH2
Ratio of Means (635/532) Unnormalized ratio of means defined by CH1/CH2
AREA Number of feature pixels
BKD_AREA Number of feature background pixels
CH1_Median - CH1_BKD Channel 1 median signal
CH2_Median - CH2_BKD Channel 2 median signal
CH1_Mean - CH1_BKD Channel 1 mean signal
CH2_Mean - CH2_BKD Channel 2 mean signal

Data table
ID_REF VALUE CH1_median CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_MEAN CH1_BKD_SD % > CH1_BKD_+2SD CH2_median CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_MEAN CH2_BKD_SD % > CH2_BKD_+2SD Ratio of Medians (635/532) Ratio of Means (635/532) AREA BKD_AREA CH1_Median - CH1_BKD CH2_Median - CH2_BKD CH1_Mean - CH1_BKD CH2_Mean - CH2_BKD
1 -0.071 62314 48978 21009 114 124 54 100 65535 51974 19978 194 196 42 100 0.952 0.944 80 506 62200 65341 48864 51780
2 -0.041 63454 45993 24194 112 124 73 100 65354 50465 20962 194 194 44 100 0.972 0.913 80 522 63342 65160 45881 50271
3 Null 139 170 122 107 114 66 17 177 270 236 190 193 37 18 -2.462 0.788 80 490 32 -13 63 80
4 1.441 119 153 121 100 105 43 17 186 270 223 179 184 36 22 2.714 0.582 80 502 19 7 53 91
5 -0.191 221 241 86 101 103 42 73 309 309 87 172 172 37 78 0.876 1.022 52 340 120 137 140 137
6 -0.352 275 269 94 112 116 47 68 377 363 71 169 170 41 93 0.784 0.809 32 236 163 208 157 194
7 -2.248 106 114 52 102 106 44 10 186 205 80 167 170 41 30 0.211 0.316 80 532 4 19 12 38
8 -1.283 158 188 89 98 101 38 41 291 306 54 145 144 30 100 0.411 0.559 12 104 60 146 90 161
9 -0.977 165 180 55 102 107 42 25 268 287 68 144 145 37 83 0.508 0.545 12 104 63 124 78 143
10 -0.014 191 202 76 88 95 38 75 262 272 49 158 158 43 71 0.99 1 32 236 103 104 114 114
11 2.234 782 947 582 100 111 56 93 309 299 132 164 165 35 62 4.703 6.274 32 236 682 145 847 135
12 3.051 1101 1131 553 98 108 46 100 279 313 153 158 161 41 50 8.289 6.665 32 176 1003 121 1033 155
13 0.476 250 273 98 97 101 40 100 242 242 42 132 141 39 75 1.391 1.6 12 104 153 110 176 110
14 0.353 207 203 69 101 105 43 56 239 242 35 156 156 37 62 1.277 1.186 32 176 106 83 102 86
15 Null 103 107 54 98 107 67 2 135 158 62 168 168 36 13 -0.152 -0.9 80 484 5 -33 9 -10
16 Null 108 116 62 100 110 63 5 151 166 59 168 171 42 8 -0.471 -8 80 493 8 -17 16 -2
17 1.657 2675 3075 1753 96 106 49 100 984 982 539 166 166 34 92 3.153 3.651 52 334 2579 818 2979 816
18 1.675 2942 2797 1160 97 111 100 100 1056 997 432 165 174 94 88 3.193 3.245 52 406 2845 891 2700 832
19 1.197 1761 1896 815 99 104 46 100 882 910 459 157 167 81 84 2.292 2.386 52 393 1662 725 1797 753
20 1.16 2455 2445 671 96 103 50 100 1206 1133 423 150 155 52 98 2.234 2.39 52 401 2359 1056 2349 983

Total number of rows: 27648

Table truncated, full table size 2545 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap