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Status
Public on Oct 14, 2005
Title
UIUC Bos taurus 13.2K 70-mer oligoarray
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Bos taurus Manufacturer
W.M. Keck Center, University of Illinois Urbana-Champaign
Manufacture protocol
70-mer oligos were printed in 150 mM Phosphate buffer at 20 uM concentration.
Support
glass
Coating
aminosilane
Description
The 13,257 oligos used in this microarray were obtained from normalized and subtracted cattle placenta and spleen cDNA libraries and based upon the earlier cDNA array platform GPL2864 (Everts et al., 2005 Vet. Immunol. Immunopathol. 105:235-245) and subtracted cDNA libraries created from embryonic (day 36 and day 64) and extra-embryonic (day 14 to 25) tissues (NCBI libraries 15993,15993, and 17188). Positive controls include beta actin (ACTB), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and hypoxanthine phosphoribosyltransferase (HPRT). Exogenous spiking controls are the soybean genes chlorophyll ab binding protein (CAB), Rubisco small chain 1 (RBS1), and major latex protein (MSG). Negative controls are Cot1 DNA, genomic DNA, spotting buffer, poly-A, and water. All 70-mer oligos were printed in duplicate on the array. Keywords: oligo, cow, placenta, bovine, embryo, microarray
Web link
http://cagst.animal.uiuc.edu/microarray/ Contributor(s)
Everts RE , Hue I , Sandra O , Renard J , Tian XC , Yang X , Lewin HA Submission date
Sep 16, 2005
Last update date
Jun 03, 2011
Contact name
Harris A Lewin
Phone
217-244-6745
Fax
217-244-5617
URL
http://cagst.animal.uiuc.edu/Lewin.html Organization name
University of Illinois
Department
Animal Sciences
Lab
Laboratory of Immunogenetics
Street address
1201 West Gregory Drive
City
Urbana
State/province
IL
ZIP/Postal code
61801
Country
USA
Samples (623)
GSM97322 , GSM97323 , GSM97325 , GSM97326 , GSM97327 , GSM97328
GSM97329 ,
GSM97330 ,
GSM97332 ,
GSM97333 ,
GSM97339 ,
GSM97340 ,
GSM97341 ,
GSM97345 ,
GSM97346 ,
GSM97350 ,
GSM97351 ,
GSM97352 ,
GSM97354 ,
GSM97356 ,
GSM97358 ,
GSM97359 ,
GSM97360 ,
GSM97363 ,
GSM97364 ,
GSM97365 ,
GSM101245 ,
GSM101246 ,
GSM226191 ,
GSM226192 ,
GSM226193 ,
GSM226194 ,
GSM226195 ,
GSM226196 ,
GSM226197 ,
GSM226198 ,
GSM226199 ,
GSM226200 ,
GSM226201 ,
GSM226202 ,
GSM226203 ,
GSM226204 ,
GSM226205 ,
GSM226206 ,
GSM226207 ,
GSM226208 ,
GSM226209 ,
GSM226210 ,
GSM226211 ,
GSM226212 ,
GSM226213 ,
GSM226214 ,
GSM226215 ,
GSM226216 ,
GSM226217 ,
GSM226218 ,
GSM226219 ,
GSM226220 ,
GSM226221 ,
GSM226222 ,
GSM226223 ,
GSM226224 ,
GSM226225 ,
GSM226226 ,
GSM226227 ,
GSM226228 ,
GSM226229 ,
GSM226230 ,
GSM226231 ,
GSM226232 ,
GSM226233 ,
GSM226234 ,
GSM226235 ,
GSM226236 ,
GSM226237 ,
GSM226238 ,
GSM226239 ,
GSM226240 ,
GSM226241 ,
GSM226242 ,
GSM226243 ,
GSM226244 ,
GSM226245 ,
GSM226246 ,
GSM226247 ,
GSM226248 ,
GSM226249 ,
GSM226250 ,
GSM226251 ,
GSM226252 ,
GSM226253 ,
GSM226254 ,
GSM226255 ,
GSM226256 ,
GSM226257 ,
GSM226258 ,
GSM226259 ,
GSM226260 ,
GSM226261 ,
GSM226262 ,
GSM226263 ,
GSM226264 ,
GSM226265 ,
GSM226266 ,
GSM231442 ,
GSM231443 ,
GSM231447 ,
GSM231448 ,
GSM231449 ,
GSM231450 ,
GSM231452 ,
GSM231453 ,
GSM231454 ,
GSM231455 ,
GSM231457 ,
GSM231458 ,
GSM231459 ,
GSM231460 ,
GSM231462 ,
GSM231463 ,
GSM231466 ,
GSM231467 ,
GSM231468 ,
GSM231469 ,
GSM231470 ,
GSM231471 ,
GSM231476 ,
GSM231477 ,
GSM231478 ,
GSM231479 ,
GSM231480 ,
GSM231481 ,
GSM231483 ,
GSM231484 ,
GSM231485 ,
GSM231486 ,
GSM231487 ,
GSM231488 ,
GSM231489 ,
GSM231490 ,
GSM231491 ,
GSM231492 ,
GSM231493 ,
GSM231494 ,
GSM231495 ,
GSM231496 ,
GSM231497 ,
GSM231498 ,
GSM231499 ,
GSM231500 ,
GSM261464 ,
GSM261465 ,
GSM261466 ,
GSM343717 ,
GSM343718 ,
GSM343719 ,
GSM343720 ,
GSM343721 ,
GSM343722 ,
GSM343723 ,
GSM343724 ,
GSM343725 ,
GSM343726 ,
GSM343727 ,
GSM343728 ,
GSM343729 ,
GSM343730 ,
GSM343731 ,
GSM343732 ,
GSM343733 ,
GSM343734 ,
GSM343735 ,
GSM343736 ,
GSM343737 ,
GSM343738 ,
GSM343739 ,
GSM343740 ,
GSM343741 ,
GSM343742 ,
GSM343743 ,
GSM343744 ,
GSM343745 ,
GSM343746 ,
GSM343747 ,
GSM343748 ,
GSM343749 ,
GSM343750 ,
GSM343751 ,
GSM343752 ,
GSM344980 ,
GSM344981 ,
GSM344982 ,
GSM344983 ,
GSM344984 ,
GSM344985 ,
GSM344986 ,
GSM344987 ,
GSM344988 ,
GSM344989 ,
GSM344990 ,
GSM344991 ,
GSM344992 ,
GSM344993 ,
GSM344994 ,
GSM344995 ,
GSM344996 ,
GSM344997 ,
GSM344998 ,
GSM344999 ,
GSM348082 ,
GSM348083 ,
GSM348084 ,
GSM348085 ,
GSM348086 ,
GSM348087 ,
GSM348088 ,
GSM348089 ,
GSM348090 ,
GSM348091 ,
GSM348092 ,
GSM348093 ,
GSM348094 ,
GSM348095 ,
GSM348096 ,
GSM348097 ,
GSM348098 ,
GSM348099 ,
GSM348100 ,
GSM348101 ,
GSM348102 ,
GSM348103 ,
GSM348104 ,
GSM348105 ,
GSM348106 ,
GSM348107 ,
GSM348108 ,
GSM348109 ,
GSM348110 ,
GSM348111 ,
GSM348112 ,
GSM348113 ,
GSM348114 ,
GSM348115 ,
GSM348116 ,
GSM348117 ,
GSM348118 ,
GSM348119 ,
GSM348120 ,
GSM348121 ,
GSM348122 ,
GSM348123 ,
GSM348124 ,
GSM348125 ,
GSM348126 ,
GSM348127 ,
GSM348128 ,
GSM348129 ,
GSM348130 ,
GSM348131 ,
GSM348132 ,
GSM348133 ,
GSM348134 ,
GSM348135 ,
GSM348136 ,
GSM348137 ,
GSM348138 ,
GSM348139 ,
GSM348140 ,
GSM348141 ,
GSM348142 ,
GSM348143 ,
GSM348144 ,
GSM348145 ,
GSM348146 ,
GSM348147 ,
GSM348148 ,
GSM348149 ,
GSM348150 ,
GSM348151 ,
GSM348152 ,
GSM348153 ,
GSM348154 ,
GSM348155 ,
GSM348156 ,
GSM348157 ,
GSM348158 ,
GSM348159 ,
GSM348160 ,
GSM348161 ,
GSM348162 ,
GSM348163 ,
GSM348164 ,
GSM348165 ,
GSM349771 ,
GSM349772 ,
GSM349773 ,
GSM349774 ,
GSM349775 ,
GSM349776 ,
GSM349777 ,
GSM349778 ,
GSM349779 ,
GSM349780 ,
GSM349781 ,
GSM349782 ,
GSM349783 ,
GSM349784 ,
GSM349785 ,
GSM349786 ,
GSM349787 ,
GSM349788 ,
GSM349789 ,
GSM349790 ,
GSM349791 ,
GSM349792 ,
GSM349793 ,
GSM349794 ,
GSM349795 ,
GSM349796 ,
GSM349797 ,
GSM349798 ,
GSM349799 ,
GSM349800 ,
GSM349801 ,
GSM349802 ,
GSM349803 ,
GSM349804 ,
GSM349805 ,
GSM349806 ,
GSM349807 ,
GSM349808 ,
GSM349809 ,
GSM349810 ,
GSM349811 ,
GSM349812 ,
GSM349813 ,
GSM349814 ,
GSM349815 ,
GSM349816 ,
GSM349817 ,
GSM349818 ,
GSM349819 ,
GSM349820 ,
GSM349821 ,
GSM349822 ,
GSM349823 ,
GSM349824 ,
GSM349825 ,
GSM349826 ,
GSM349827 ,
GSM349828 ,
GSM349829 ,
GSM349830 ,
GSM349831 ,
GSM349832 ,
GSM349833 ,
GSM349834 ,
GSM349835 ,
GSM349836 ,
GSM349837 ,
GSM349838 ,
GSM349839 ,
GSM349840 ,
GSM352591 ,
GSM352592 ,
GSM352593 ,
GSM352594 ,
GSM352595 ,
GSM352596 ,
GSM352597 ,
GSM352598 ,
GSM352599 ,
GSM352600 ,
GSM352601 ,
GSM352602 ,
GSM352603 ,
GSM352604 ,
GSM352605 ,
GSM352606 ,
GSM352607 ,
GSM352608 ,
GSM352609 ,
GSM352610 ,
GSM352611 ,
GSM352612 ,
GSM352613 ,
GSM352614 ,
GSM352615 ,
GSM352616 ,
GSM352617 ,
GSM352618 ,
GSM352619 ,
GSM352620 ,
GSM352631 ,
GSM352632 ,
GSM352633 ,
GSM352634 ,
GSM352635 ,
GSM352636 ,
GSM352637 ,
GSM352638 ,
GSM352639 ,
GSM352640 ,
GSM352641 ,
GSM352642 ,
GSM352643 ,
GSM352644 ,
GSM352645 ,
GSM352646 ,
GSM352647 ,
GSM352648 ,
GSM352649 ,
GSM352650 ,
GSM352651 ,
GSM352652 ,
GSM352653 ,
GSM352654 ,
GSM352655 ,
GSM352656 ,
GSM352657 ,
GSM352658 ,
GSM352659 ,
GSM352660 ,
GSM352661 ,
GSM352662 ,
GSM352663 ,
GSM352664 ,
GSM352665 ,
GSM352666 ,
GSM352667 ,
GSM352668 ,
GSM352669 ,
GSM352670 ,
GSM352671 ,
GSM352672 ,
GSM352673 ,
GSM352674 ,
GSM355348 ,
GSM355349 ,
GSM355350 ,
GSM355351 ,
GSM355352 ,
GSM355353 ,
GSM355354 ,
GSM355355 ,
GSM355356 ,
GSM355357 ,
GSM355358 ,
GSM355359 ,
GSM355360 ,
GSM355361 ,
GSM355362 ,
GSM355363 ,
GSM355364 ,
GSM355365 ,
GSM355366 ,
GSM355367 ,
GSM355368 ,
GSM355369 ,
GSM355370 ,
GSM355371 ,
GSM355372 ,
GSM355373 ,
GSM355374 ,
GSM355375 ,
GSM355376 ,
GSM355377 ,
GSM355378 ,
GSM355379 ,
GSM355380 ,
GSM355381 ,
GSM355382 ,
GSM355383 ,
GSM355384 ,
GSM355385 ,
GSM355386 ,
GSM355387 ,
GSM355388 ,
GSM355389 ,
GSM355390 ,
GSM355391 ,
GSM355392 ,
GSM355393 ,
GSM355394 ,
GSM355395 ,
GSM355396 ,
GSM355397 ,
GSM355398 ,
GSM355399 ,
GSM355400 ,
GSM355401 ,
GSM355402 ,
GSM355403 ,
GSM355404 ,
GSM355405 ,
GSM355406 ,
GSM355407 ,
GSM355408 ,
GSM355409 ,
GSM355410 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (14)
GSE4304 Nutrition-induced ketosis alters metabolic and signaling gene networks in liver of periparturient dairy cows
GSE8923 Aberrant gene expression patterns in placentomes of cattle cloned by somatic cell nuclear transfer
GSE9162 Major differences in gene expression profiles revealed in day-25 trophoblast but not embryonic discs from cattle clones
GSE10342 Bovine trophoblasts: control vs. infected with Brucella abortus
GSE13664 Cycle versus Pregnancy
GSE13728 Comparison between caruncular and intercaruncular areas in the endometrium of cyclic and pregnant cows
GSE13847 Role of SPI-1 Secreted Effectors, SipA, SopABDE2, in Acute Bovine Response to Salmonella enterica Serovar Typhimurium
GSE13888 Bovine Peyer's Patch Infected with Mycobacterium avium ssp. paratuberculosis and Mycobacterium avium ssp. avium
GSE14047 Comparison between caruncles and intercaruncles in AI, IVF-ET and SCNT pregnancies
GSE14050 AI versus IVF-ET & AI versus SCNT
GSE14638 Comparisons of caruncles, intercaruncles, AI, IVF-ET and SCNT in pregnancies
GSE16112 Global gene expression of B. abortus-infected bovine macrophages
GSE29987 Comparison of transcriptome of in vitro and in vivo-produced bovine fetuses; specifically in liver and placental tissues.
GSE41835 Temporal gene expression analysis of the Brucella melitensis-infected bovine Peyer's patch
Relations Alternative to
GPL13515 Alternative to
GPL8776 Alternative to
GPL9689
Data table header descriptions ID Block Block on the array
Row row within block
Column column within block
GB_ACC GenBank accession number when available
SPOT_ID Local spot identifier
SEQUENCE
Data table ID Block Row Column GB_ACC SPOT_ID SEQUENCE 1
1
1
1
AI495218 OLIGO_00024
CAACGGCTTCATCCGTATCATCGGATTCGACAACGTTCGCCAAGTGCAGTGCATCAGCTTCATCGCCTAC
2
1
1
2
AI495218 OLIGO_00024
CAACGGCTTCATCCGTATCATCGGATTCGACAACGTTCGCCAAGTGCAGTGCATCAGCTTCATCGCCTAC
3
1
1
3
BUFFER
4
1
1
4
BUFFER
5
1
1
5
DR697717 OLIGO_03948
TGGGTGGCCTCGCCCTCAAGGGGCTTGCACGGGGCCACGAGAACGGGCCTGGAACTCCTCCATGTACCTG
6
1
1
6
DR697717 OLIGO_03948
TGGGTGGCCTCGCCCTCAAGGGGCTTGCACGGGGCCACGAGAACGGGCCTGGAACTCCTCCATGTACCTG
7
1
1
7
BF045945 OLIGO_04044
CTGGTGAAATATGATGGAATTGACTGTGTCTATGGACTGGAACTTCACAGAGATAAAAGGATTTTAAAGC
8
1
1
8
BF045945 OLIGO_04044
CTGGTGAAATATGATGGAATTGACTGTGTCTATGGACTGGAACTTCACAGAGATAAAAGGATTTTAAAGC
9
1
1
9
AW464959 OLIGO_03839
GGCATACTTTTTAGAAATCGTTTTGGGGATGATTAAGGCCGAGTAAAAATTTATGAATTCCTTGCCTTGT
10
1
1
10
AW464959 OLIGO_03839
GGCATACTTTTTAGAAATCGTTTTGGGGATGATTAAGGCCGAGTAAAAATTTATGAATTCCTTGCCTTGT
11
1
1
11
AW465775 OLIGO_03887
TTGACTTTGTTGCCAAAAACAAGCCCATCAGGACCTTCTCCCCCTTCTTCCCATTTCTCCTTCCCACTTC
12
1
1
12
AW465775 OLIGO_03887
TTGACTTTGTTGCCAAAAACAAGCCCATCAGGACCTTCTCCCCCTTCTTCCCATTTCTCCTTCCCACTTC
13
1
1
13
DR697701 OLIGO_03935
AAGCAGTGAGAATACATGTTTTTTTCCACATGTGTGGCCTGAATTTCTCCCAAATTTAGACTATGCCAAA
14
1
1
14
DR697701 OLIGO_03935
AAGCAGTGAGAATACATGTTTTTTTCCACATGTGTGGCCTGAATTTCTCCCAAATTTAGACTATGCCAAA
15
1
1
15
BF042443 OLIGO_04031
CAGCATGTAGCTATTCCTCTTACCCTTCTAATGCAGTCTGTCTTGGTCTCTACAGAGCTTCAGTCTCACC
16
1
1
16
BF042443 OLIGO_04031
CAGCATGTAGCTATTCCTCTTACCCTTCTAATGCAGTCTGTCTTGGTCTCTACAGAGCTTCAGTCTCACC
17
1
1
17
CR454453 OLIGO_07969
GACACATTACTAATACTGTAGGAATTGGTGAGGCCTTGACTTAAAAACTTTCTTTGTACTGTGATTTCCT
18
1
1
18
CR454453 OLIGO_07969
GACACATTACTAATACTGTAGGAATTGGTGAGGCCTTGACTTAAAAACTTTCTTTGTACTGTGATTTCCT
19
1
1
19
CN439999 OLIGO_08064
TAGTTCGAGCCCTTATGACAACTGTCTGCTATTCTGCAATTATCTTTGAGTCTTCTCTCCGAGTGGATGT
20
1
1
20
CN439999 OLIGO_08064
TAGTTCGAGCCCTTATGACAACTGTCTGCTATTCTGCAATTATCTTTGAGTCTTCTCTCCGAGTGGATGT
27648 2768 Kbytes .Supplementary data files not provided
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