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Sample GSM97360 Query DataSets for GSM97360
Status Public on Oct 09, 2007
Title Liver_healthy_cow_early postpartum_7105Cy5
Sample type RNA
 
Channel 1
Source name liver, cow, labelled with Cy5
Organism Bos taurus
Characteristics Liver RNA
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name reference standard RNA, labelled with Cy3
Organism Bos taurus
Characteristics RNA pool of bovine tissues
Extracted molecule total RNA
Label Cy3
 
 
Description Cow fed ad libitum early postpartum. Liver RNA was cohybridized with RNA from a pool of bovine tissues.
Data processing loess normalization, log2 transformation
 
Submission date Feb 17, 2006
Last update date Oct 08, 2007
Contact name Juan J. Loor
E-mail(s) [email protected]
Phone 217-244-5957
Organization name University of Illinois
Department Animal Sciences
Lab Mammalian NutriPhysioGenomics
Street address 1207 West Gregory Drive
City Urbana
State/province IL
ZIP/Postal code 61801
Country USA
 
Platform ID GPL2853
Series (1)
GSE4304 Nutrition-induced ketosis alters metabolic and signaling gene networks in liver of periparturient dairy cows

Data table header descriptions
ID_REF
VALUE log2 ratio of median defined by CH1/CH2 (not normalized)
CH1_median CH1 (F635) median fluorescence intensity
CH1_MEAN CH1 (F635) mean fluorescence intensity
CH1_SD CH1 (F635) fluorescence intensity standard deviation
CH1_BKD_Median CH1 (F635) background median fluorescence intensity
CH1_BKD_MEAN CH1 (F635) background mean fluorescence intensity
CH1_BKD_SD CH1 (F635) background fluorescence intensity standard deviation
% > CH1_BKD_+2SD % of feature pixels greater than 2 standard deviations over the background
CH2_median CH2 (F532) median fluorescence intensity
CH2_MEAN CH2 (F532) mean fluorescence intensity
CH2_SD CH2 (F532) fluorescence intensity standard deviation
CH2_BKD_Median CH2 (F532) background median fluorescence intensity
CH2_BKD_MEAN CH2 (F532) background mean fluorescence intensity
CH2_BKD_SD CH2 (F532) background fluorescence intensity standard deviation
% > CH2_BKD_+2SD % of feature pixels greater than 2 standard deviations over the background
Ratio of Medians (635/532) Unnormalized ratio of medians defined by CH1/CH2
Ratio of Means (635/532) Unnormalized ratio of means defined by CH1/CH2
AREA Number of feature pixels
BKD_AREA Number of feature background pixels
CH1_Median - CH1_BKD Channel 1 median signal
CH2_Median - CH2_BKD Channel 2 median signal
CH1_Mean - CH1_BKD Channel 1 mean signal
CH2_Mean - CH2_BKD Channel 2 mean signal

Data table
ID_REF VALUE CH1_median CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_MEAN CH1_BKD_SD % > CH1_BKD_+2SD CH2_median CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_MEAN CH2_BKD_SD % > CH2_BKD_+2SD Ratio of Medians (635/532) Ratio of Means (635/532) AREA BKD_AREA CH1_Median - CH1_BKD CH2_Median - CH2_BKD CH1_Mean - CH1_BKD CH2_Mean - CH2_BKD
1 0.646 65535 52256 20631 174 182 83 100 41961 39222 23922 191 197 48 100 1.565 1.334 80 605 65361 41770 52082 39031
2 0.55 65535 55119 17540 164 172 74 100 44848 40685 24513 187 192 50 100 1.464 1.357 80 483 65371 44661 54955 40498
3 Null 170 216 141 155 166 73 20 169 209 106 186 190 42 17 -0.882 2.652 80 471 15 -17 61 23
4 Null 170 205 125 151 164 74 15 179 217 119 181 190 61 12 -9.5 1.5 80 503 19 -2 54 36
5 0.282 337 334 106 151 160 74 59 330 324 69 177 182 51 81 1.216 1.245 32 236 186 153 183 147
6 0.179 341 359 127 152 161 83 53 340 351 81 173 184 93 43 1.132 1.163 32 236 189 167 207 178
7 1.778 174 183 92 150 159 73 11 183 193 65 176 180 57 8 3.429 1.941 80 495 24 7 33 17
8 0.392 189 194 107 147 161 79 12 203 202 59 171 176 51 13 1.313 1.516 80 493 42 32 47 31
9 0.981 224 243 122 149 162 70 26 212 227 85 174 175 42 36 1.974 1.774 80 484 75 38 94 53
10 0.234 168 183 99 148 156 72 12 193 207 77 176 178 43 25 1.176 1.129 80 502 20 17 35 31
11 -2.36 265 310 182 139 154 73 43 812 906 414 165 176 91 90 0.195 0.231 32 176 126 647 171 741
12 -1.775 317 305 142 135 147 71 53 787 843 336 164 169 45 100 0.292 0.25 32 176 182 623 170 679
13 -1.425 228 231 134 155 158 75 25 339 360 60 143 150 39 100 0.372 0.35 12 104 73 196 76 217
14 -2.118 202 218 112 155 164 78 25 348 358 60 144 154 43 100 0.23 0.294 12 104 47 204 63 214
15 Null 143 151 65 141 147 67 5 143 158 48 164 170 48 3 -0.095 -1.667 80 512 2 -21 10 -6
16 Null 153 156 77 144 152 71 6 157 161 49 165 170 59 2 -1.125 -3 80 494 9 -8 12 -4
17 -0.604 2071 2384 1439 146 154 73 98 3088 3517 2016 162 163 37 100 0.658 0.667 52 334 1925 2926 2238 3355
18 -0.457 2490 3056 1887 134 143 68 98 3393 4225 2501 158 162 38 100 0.728 0.718 52 414 2356 3235 2922 4067
19 0.314 2627 2541 1196 135 144 67 100 2159 2555 1141 155 159 36 100 1.244 1.003 52 394 2492 2004 2406 2400
20 -0.057 2160 2347 970 142 150 70 100 2256 2575 897 156 162 41 100 0.961 0.912 52 402 2018 2100 2205 2419

Total number of rows: 27648

Table truncated, full table size 2590 Kbytes.




Supplementary data files not provided
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