GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM9741

Query DataSets for GSM9741

Status

Public on Aug 06, 2004

Title

nl057

Sample type

RNA

Source name

primary acute lymphoblastic leukemia cells

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:59, Count:32
Corner- Avg:5184, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:35.504620,SFGene:All
Background:Avg:43.46,Stdev:0.82,Max:45.1,Min:41.0
Noise:Avg:1.31,Stdev:0.05,Max:1.5,Min:1.2
RawQ:1.87
Keywords = ALL
Lot batch =

Submission date

Sep 05, 2003

Last update date

May 28, 2005

Contact name

William E Evans

E-mail(s)

[email protected]

Phone

901-495-4995

Fax

901-495-6869

URL

http://www.stjude.org/leukemia/bio_evans.htm

Organization name

St.Jude Children's Research Hospital

Department

Pharmaceutical Sciences

Lab

Evans

Street address

332 N. Lauderdale St.

City

Memphis

State/province

ZIP/Postal code

38105

Country

USA

Platform ID

GPL96

Series (10)

More...

GSE635	Identification of novel genomic determinants of cellular drug resistance in acute lymphoblastic leukemia.
GSE645	ASP resistant all ALL
GSE647	PRED resistant all ALL

Data table header descriptions
ID_REF	As defined by Affymetrix, these are the probe set identifiers, each of which is unique to a specific probe set defining a specific region of a single gene or set.
VALUE	This is the final calculated meauremeent for each probe set identifer that has been made comparable, through scaling or normalization, accross all samples and rows.
DETECTION P-VALUE	Defines the confidence in the calculated signal accurately reflecting the expression level of the specific gene or est that the probe set identifies.

Data table
ID_REF	VALUE	DETECTION P-VALUE
1007_s_at	1237.1	0.014937
1053_at	166.4	0.358690
117_at	170.2	0.581931
121_at	1043.4	0.003585
1255_g_at	159.5	0.378184
1294_at	627.2	0.035163
1316_at	548.7	0.021866
1320_at	46.3	0.660442
1405_i_at	46.7	0.703191
1431_at	157.2	0.107301
1438_at	225.0	0.520620
1487_at	195.0	0.458816
1494_f_at	312.6	0.127645
1598_g_at	643.1	0.320830
160020_at	1203.7	0.019304
1729_at	254.0	0.358690
1773_at	233.2	0.378184
177_at	271.2	0.066865
179_at	1540.1	0.127645
1861_at	338.0	0.021866

Total number of rows: 22283

Table truncated, full table size 560 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM9741.CEL.gz	3.0 Mb	(ftp)(http)	CEL