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Sample GSM9842

Query DataSets for GSM9842

Status

Public on Aug 06, 2004

Title

nl158

Sample type

RNA

Source name

primary acute lymphoblastic leukemia cells

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Sample Type: Human Total RNA
Project: Evans
Sample User: jmorris
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:55, Count:32
Corner- Avg:5854, Count:32
BF: Alpha1:0.05,Alpha2:0.065,Tau:0.015,Gamma1H:0.0045,Gamma1L:0.0045,Gamma2H:0.006,Gamma2L:0.006,Perturbation:1.1,TGT:500,NF:1.000000,SF:18.367582,SFGene:All
Background:Avg:47.30,Stdev:1.27,Max:50.0,Min:44.2
Noise:Avg:1.69,Stdev:0.10,Max:2.0,Min:1.5
RawQ:1.99
Keywords = ALL
Lot batch =

Submission date

Sep 06, 2003

Last update date

May 28, 2005

Contact name

William E Evans

E-mail(s)

[email protected]

Phone

901-495-4995

Fax

901-495-6869

URL

http://www.stjude.org/leukemia/bio_evans.htm

Organization name

St.Jude Children's Research Hospital

Department

Pharmaceutical Sciences

Lab

Evans

Street address

332 N. Lauderdale St.

City

Memphis

State/province

ZIP/Postal code

38105

Country

USA

Platform ID

GPL96

Series (6)

More...

GSE635	Identification of novel genomic determinants of cellular drug resistance in acute lymphoblastic leukemia.
GSE646	PRED sensitive all ALL
GSE649	VCR resistant all ALL

Data table header descriptions
ID_REF	As defined by Affymetrix, these are the probe set identifiers, each of which is unique to a specific probe set defining a specific region of a single gene or set.
VALUE	This is the final calculated meauremeent for each probe set identifer that has been made comparable, through scaling or normalization, accross all samples and rows.
DETECTION P-VALUE	Defines the confidence in the calculated signal accurately reflecting the expression level of the specific gene or est that the probe set identifies.

Data table
ID_REF	VALUE	DETECTION P-VALUE
1007_s_at	604.2	0.004863
1053_at	213.4	0.117160
117_at	323.0	0.138765
121_at	1375.5	0.001354
1255_g_at	144.1	0.320830
1294_at	818.7	0.001354
1316_at	248.5	0.081337
1320_at	189.0	0.234557
1405_i_at	238.4	0.254899
1431_at	108.7	0.138765
1438_at	452.7	0.014937
1487_at	486.1	0.175989
1494_f_at	282.5	0.089405
1598_g_at	648.9	0.138765
160020_at	700.0	0.024711
1729_at	66.9	0.479380
1773_at	294.6	0.162935
177_at	139.0	0.218983
179_at	1216.3	0.054470
1861_at	240.9	0.204022

Total number of rows: 22283

Table truncated, full table size 560 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM9842.CEL.gz	3.2 Mb	(ftp)(http)	CEL