Name: rs71157609
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs71157609

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr17:42186822-42186839 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: del(T)₆ / del(T)₅ / del(T)₄ / delT…
del(T)₆ / del(T)₅ / del(T)₄ / delTTT / delTT / delT / dupT / dupTT / dupTTT / dup(T)₄ / dup(T)₅
Variation Type: Indel Insertion and Deletion
Frequency: del(T)₅=0.000004 (1/264690, TOPMED)
delT=0.00825 (115/13947, ALFA)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: HCRT : 2KB Upstream Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	13947	TTTTTTTTTTTTTTTTTT=0.98946	TTTTTTTTTTTT=0.00000, TTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTTT=0.00825, TTTTTTTTTTTTTTTTTTT=0.00229, TTTTTTTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTTTTTTT=0.00000	0.98372	0.000288	0.015992	3
European	Sub	10799	TTTTTTTTTTTTTTTTTT=0.98648	TTTTTTTTTTTT=0.00000, TTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTTT=0.01056, TTTTTTTTTTTTTTTTTTT=0.00296, TTTTTTTTTTTTTTTTTTTT=0.00000, TTTTTTTTTTTTTTTTTTTTT=0.00000	0.979132	0.000373	0.020496	2
African	Sub	2072	TTTTTTTTTTTTTTTTTT=1.0000	TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTT=0.0000	1.0	0.0	0.0	N/A
African Others	Sub	70	TTTTTTTTTTTTTTTTTT=1.00	TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
African American	Sub	2002	TTTTTTTTTTTTTTTTTT=1.0000	TTTTTTTTTTTT=0.0000, TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTTTTTTTT=0.0000	1.0	0.0	0.0	N/A
Asian	Sub	38	TTTTTTTTTTTTTTTTTT=1.00	TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
East Asian	Sub	24	TTTTTTTTTTTTTTTTTT=1.00	TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other Asian	Sub	14	TTTTTTTTTTTTTTTTTT=1.00	TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Latin American 1	Sub	110	TTTTTTTTTTTTTTTTTT=1.000	TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
Latin American 2	Sub	488	TTTTTTTTTTTTTTTTTT=1.000	TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
South Asian	Sub	66	TTTTTTTTTTTTTTTTTT=1.00	TTTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other	Sub	374	TTTTTTTTTTTTTTTTTT=0.997	TTTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTT=0.003, TTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTTTTTTTT=0.000	0.994652	0.0	0.005348	0

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	(T)₁₈=0.999996	del(T)₅=0.000004
Allele Frequency Aggregator	Total	Global	13947	(T)₁₈=0.98946	del(T)₆=0.00000, del(T)₅=0.00000, del(T)₄=0.00000, delTTT=0.00000, delTT=0.00000, delT=0.00825, dupT=0.00229, dupTT=0.00000, dupTTT=0.00000
Allele Frequency Aggregator	European	Sub	10799	(T)₁₈=0.98648	del(T)₆=0.00000, del(T)₅=0.00000, del(T)₄=0.00000, delTTT=0.00000, delTT=0.00000, delT=0.01056, dupT=0.00296, dupTT=0.00000, dupTTT=0.00000
Allele Frequency Aggregator	African	Sub	2072	(T)₁₈=1.0000	del(T)₆=0.0000, del(T)₅=0.0000, del(T)₄=0.0000, delTTT=0.0000, delTT=0.0000, delT=0.0000, dupT=0.0000, dupTT=0.0000, dupTTT=0.0000
Allele Frequency Aggregator	Latin American 2	Sub	488	(T)₁₈=1.000	del(T)₆=0.000, del(T)₅=0.000, del(T)₄=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000
Allele Frequency Aggregator	Other	Sub	374	(T)₁₈=0.997	del(T)₆=0.000, del(T)₅=0.000, del(T)₄=0.000, delTTT=0.000, delTT=0.000, delT=0.003, dupT=0.000, dupTT=0.000, dupTTT=0.000
Allele Frequency Aggregator	Latin American 1	Sub	110	(T)₁₈=1.000	del(T)₆=0.000, del(T)₅=0.000, del(T)₄=0.000, delTTT=0.000, delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000
Allele Frequency Aggregator	South Asian	Sub	66	(T)₁₈=1.00	del(T)₆=0.00, del(T)₅=0.00, del(T)₄=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00
Allele Frequency Aggregator	Asian	Sub	38	(T)₁₈=1.00	del(T)₆=0.00, del(T)₅=0.00, del(T)₄=0.00, delTTT=0.00, delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 17	NC_000017.11:g.42186834_42186839del
GRCh38.p14 chr 17	NC_000017.11:g.42186835_42186839del
GRCh38.p14 chr 17	NC_000017.11:g.42186836_42186839del
GRCh38.p14 chr 17	NC_000017.11:g.42186837_42186839del
GRCh38.p14 chr 17	NC_000017.11:g.42186838_42186839del
GRCh38.p14 chr 17	NC_000017.11:g.42186839del
GRCh38.p14 chr 17	NC_000017.11:g.42186839dup
GRCh38.p14 chr 17	NC_000017.11:g.42186838_42186839dup
GRCh38.p14 chr 17	NC_000017.11:g.42186837_42186839dup
GRCh38.p14 chr 17	NC_000017.11:g.42186836_42186839dup
GRCh38.p14 chr 17	NC_000017.11:g.42186835_42186839dup
GRCh37.p13 chr 17	NC_000017.10:g.40338852_40338857del
GRCh37.p13 chr 17	NC_000017.10:g.40338853_40338857del
GRCh37.p13 chr 17	NC_000017.10:g.40338854_40338857del
GRCh37.p13 chr 17	NC_000017.10:g.40338855_40338857del
GRCh37.p13 chr 17	NC_000017.10:g.40338856_40338857del
GRCh37.p13 chr 17	NC_000017.10:g.40338857del
GRCh37.p13 chr 17	NC_000017.10:g.40338857dup
GRCh37.p13 chr 17	NC_000017.10:g.40338856_40338857dup
GRCh37.p13 chr 17	NC_000017.10:g.40338855_40338857dup
GRCh37.p13 chr 17	NC_000017.10:g.40338854_40338857dup
GRCh37.p13 chr 17	NC_000017.10:g.40338853_40338857dup
HCRT RefSeqGene	NG_011448.1:g.3626_3631del
HCRT RefSeqGene	NG_011448.1:g.3627_3631del
HCRT RefSeqGene	NG_011448.1:g.3628_3631del
HCRT RefSeqGene	NG_011448.1:g.3629_3631del
HCRT RefSeqGene	NG_011448.1:g.3630_3631del
HCRT RefSeqGene	NG_011448.1:g.3631del
HCRT RefSeqGene	NG_011448.1:g.3631dup
HCRT RefSeqGene	NG_011448.1:g.3630_3631dup
HCRT RefSeqGene	NG_011448.1:g.3629_3631dup
HCRT RefSeqGene	NG_011448.1:g.3628_3631dup
HCRT RefSeqGene	NG_011448.1:g.3627_3631dup

Gene: HCRT, hypocretin neuropeptide precursor (minus strand) : 2KB Upstream Variant

Molecule type	Change	Amino acid[Codon]	SO Term
HCRT transcript	NM_001524.1:c.	N/A	Upstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₈=	del(T)₆	del(T)₅	del(T)₄	delTTT	delTT	delT	dupT	dupTT	dupTTT	dup(T)₄	dup(T)₅
GRCh38.p14 chr 17	NC_000017.11:g.42186822_42186839=	NC_000017.11:g.42186834_42186839del	NC_000017.11:g.42186835_42186839del	NC_000017.11:g.42186836_42186839del	NC_000017.11:g.42186837_42186839del	NC_000017.11:g.42186838_42186839del	NC_000017.11:g.42186839del	NC_000017.11:g.42186839dup	NC_000017.11:g.42186838_42186839dup	NC_000017.11:g.42186837_42186839dup	NC_000017.11:g.42186836_42186839dup	NC_000017.11:g.42186835_42186839dup
GRCh37.p13 chr 17	NC_000017.10:g.40338840_40338857=	NC_000017.10:g.40338852_40338857del	NC_000017.10:g.40338853_40338857del	NC_000017.10:g.40338854_40338857del	NC_000017.10:g.40338855_40338857del	NC_000017.10:g.40338856_40338857del	NC_000017.10:g.40338857del	NC_000017.10:g.40338857dup	NC_000017.10:g.40338856_40338857dup	NC_000017.10:g.40338855_40338857dup	NC_000017.10:g.40338854_40338857dup	NC_000017.10:g.40338853_40338857dup
HCRT RefSeqGene	NG_011448.1:g.3614_3631=	NG_011448.1:g.3626_3631del	NG_011448.1:g.3627_3631del	NG_011448.1:g.3628_3631del	NG_011448.1:g.3629_3631del	NG_011448.1:g.3630_3631del	NG_011448.1:g.3631del	NG_011448.1:g.3631dup	NG_011448.1:g.3630_3631dup	NG_011448.1:g.3629_3631dup	NG_011448.1:g.3628_3631dup	NG_011448.1:g.3627_3631dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

31 SubSNP, 21 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	HUMANGENOME_JCVI	ss95694045	Feb 13, 2009 (130)
2	GMI	ss289325955	May 04, 2012 (137)
3	SYSTEMSBIOZJU	ss2629026508	Nov 08, 2017 (151)
4	SWEGEN	ss3015531477	Nov 08, 2017 (151)
5	PACBIO	ss3788203396	Jul 13, 2019 (153)
6	KOGIC	ss3978838779	Apr 27, 2020 (154)
7	KOGIC	ss3978838780	Apr 27, 2020 (154)
8	KOGIC	ss3978838781	Apr 27, 2020 (154)
9	GNOMAD	ss4311577925	Apr 27, 2021 (155)
10	GNOMAD	ss4311577926	Apr 27, 2021 (155)
11	GNOMAD	ss4311577927	Apr 27, 2021 (155)
12	GNOMAD	ss4311577928	Apr 27, 2021 (155)
13	GNOMAD	ss4311577929	Apr 27, 2021 (155)
14	GNOMAD	ss4311577930	Apr 27, 2021 (155)
15	GNOMAD	ss4311577931	Apr 27, 2021 (155)
16	GNOMAD	ss4311577932	Apr 27, 2021 (155)
17	GNOMAD	ss4311577933	Apr 27, 2021 (155)
18	GNOMAD	ss4311577934	Apr 27, 2021 (155)
19	TOPMED	ss5035926625	Apr 27, 2021 (155)
20	TOMMO_GENOMICS	ss5222406325	Apr 27, 2021 (155)
21	TOMMO_GENOMICS	ss5222406326	Apr 27, 2021 (155)
22	TOMMO_GENOMICS	ss5222406327	Apr 27, 2021 (155)
23	1000G_HIGH_COVERAGE	ss5303127740	Oct 16, 2022 (156)
24	1000G_HIGH_COVERAGE	ss5303127741	Oct 16, 2022 (156)
25	HUGCELL_USP	ss5496184514	Oct 16, 2022 (156)
26	SANFORD_IMAGENETICS	ss5660101490	Oct 16, 2022 (156)
27	TOMMO_GENOMICS	ss5778610713	Oct 16, 2022 (156)
28	TOMMO_GENOMICS	ss5778610714	Oct 16, 2022 (156)
29	TOMMO_GENOMICS	ss5778610715	Oct 16, 2022 (156)
30	EVA	ss5851808525	Oct 16, 2022 (156)
31	EVA	ss5980966883	Oct 16, 2022 (156)
32	gnomAD - Genomes Submission ignored due to conflicting rows: Row 507189314 (NC_000017.11:42186821::T 3093/111214) Row 507189315 (NC_000017.11:42186821::TT 63/111192) Row 507189316 (NC_000017.11:42186821::TTT 4/111200)...	-	Apr 27, 2021 (155)
33	gnomAD - Genomes Submission ignored due to conflicting rows: Row 507189314 (NC_000017.11:42186821::T 3093/111214) Row 507189315 (NC_000017.11:42186821::TT 63/111192) Row 507189316 (NC_000017.11:42186821::TTT 4/111200)...	-	Apr 27, 2021 (155)
34	gnomAD - Genomes Submission ignored due to conflicting rows: Row 507189314 (NC_000017.11:42186821::T 3093/111214) Row 507189315 (NC_000017.11:42186821::TT 63/111192) Row 507189316 (NC_000017.11:42186821::TTT 4/111200)...	-	Apr 27, 2021 (155)
35	gnomAD - Genomes Submission ignored due to conflicting rows: Row 507189314 (NC_000017.11:42186821::T 3093/111214) Row 507189315 (NC_000017.11:42186821::TT 63/111192) Row 507189316 (NC_000017.11:42186821::TTT 4/111200)...	-	Apr 27, 2021 (155)
36	gnomAD - Genomes Submission ignored due to conflicting rows: Row 507189314 (NC_000017.11:42186821::T 3093/111214) Row 507189315 (NC_000017.11:42186821::TT 63/111192) Row 507189316 (NC_000017.11:42186821::TTT 4/111200)...	-	Apr 27, 2021 (155)
37	gnomAD - Genomes Submission ignored due to conflicting rows: Row 507189314 (NC_000017.11:42186821::T 3093/111214) Row 507189315 (NC_000017.11:42186821::TT 63/111192) Row 507189316 (NC_000017.11:42186821::TTT 4/111200)...	-	Apr 27, 2021 (155)
38	gnomAD - Genomes Submission ignored due to conflicting rows: Row 507189314 (NC_000017.11:42186821::T 3093/111214) Row 507189315 (NC_000017.11:42186821::TT 63/111192) Row 507189316 (NC_000017.11:42186821::TTT 4/111200)...	-	Apr 27, 2021 (155)
39	gnomAD - Genomes Submission ignored due to conflicting rows: Row 507189314 (NC_000017.11:42186821::T 3093/111214) Row 507189315 (NC_000017.11:42186821::TT 63/111192) Row 507189316 (NC_000017.11:42186821::TTT 4/111200)...	-	Apr 27, 2021 (155)
40	gnomAD - Genomes Submission ignored due to conflicting rows: Row 507189314 (NC_000017.11:42186821::T 3093/111214) Row 507189315 (NC_000017.11:42186821::TT 63/111192) Row 507189316 (NC_000017.11:42186821::TTT 4/111200)...	-	Apr 27, 2021 (155)
41	gnomAD - Genomes Submission ignored due to conflicting rows: Row 507189314 (NC_000017.11:42186821::T 3093/111214) Row 507189315 (NC_000017.11:42186821::TT 63/111192) Row 507189316 (NC_000017.11:42186821::TTT 4/111200)...	-	Apr 27, 2021 (155)
42	Korean Genome Project Submission ignored due to conflicting rows: Row 35216780 (NC_000017.11:42186822:T: 543/1828) Row 35216781 (NC_000017.11:42186823::T 112/1828) Row 35216782 (NC_000017.11:42186821:TT: 29/1828)	-	Apr 27, 2020 (154)
43	Korean Genome Project Submission ignored due to conflicting rows: Row 35216780 (NC_000017.11:42186822:T: 543/1828) Row 35216781 (NC_000017.11:42186823::T 112/1828) Row 35216782 (NC_000017.11:42186821:TT: 29/1828)	-	Apr 27, 2020 (154)
44	Korean Genome Project Submission ignored due to conflicting rows: Row 35216780 (NC_000017.11:42186822:T: 543/1828) Row 35216781 (NC_000017.11:42186823::T 112/1828) Row 35216782 (NC_000017.11:42186821:TT: 29/1828)	-	Apr 27, 2020 (154)
45	8.3KJPN Submission ignored due to conflicting rows: Row 80375632 (NC_000017.10:40338839:T: 3302/16536) Row 80375633 (NC_000017.10:40338839::T 236/16536) Row 80375634 (NC_000017.10:40338839:TT: 13/16536)	-	Apr 27, 2021 (155)
46	8.3KJPN Submission ignored due to conflicting rows: Row 80375632 (NC_000017.10:40338839:T: 3302/16536) Row 80375633 (NC_000017.10:40338839::T 236/16536) Row 80375634 (NC_000017.10:40338839:TT: 13/16536)	-	Apr 27, 2021 (155)
47	8.3KJPN Submission ignored due to conflicting rows: Row 80375632 (NC_000017.10:40338839:T: 3302/16536) Row 80375633 (NC_000017.10:40338839::T 236/16536) Row 80375634 (NC_000017.10:40338839:TT: 13/16536)	-	Apr 27, 2021 (155)
48	14KJPN Submission ignored due to conflicting rows: Row 112447817 (NC_000017.11:42186821:T: 4867/25096) Row 112447818 (NC_000017.11:42186821::T 342/25096) Row 112447819 (NC_000017.11:42186821:TT: 18/25096)	-	Oct 16, 2022 (156)
49	14KJPN Submission ignored due to conflicting rows: Row 112447817 (NC_000017.11:42186821:T: 4867/25096) Row 112447818 (NC_000017.11:42186821::T 342/25096) Row 112447819 (NC_000017.11:42186821:TT: 18/25096)	-	Oct 16, 2022 (156)
50	14KJPN Submission ignored due to conflicting rows: Row 112447817 (NC_000017.11:42186821:T: 4867/25096) Row 112447818 (NC_000017.11:42186821::T 342/25096) Row 112447819 (NC_000017.11:42186821:TT: 18/25096)	-	Oct 16, 2022 (156)
51	TopMed	NC_000017.11 - 42186822	Apr 27, 2021 (155)
52	ALFA	NC_000017.11 - 42186822	Apr 27, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
8317882759	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT	(self)
ss5980966883	NC_000017.10:40338839:TTTTT:	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT
251472287, ss4311577934, ss5035926625	NC_000017.11:42186821:TTTTT:	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
8317882759	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss4311577933	NC_000017.11:42186821:TTTT:	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
8317882759	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss4311577932	NC_000017.11:42186821:TTT:	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
8317882759	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss5222406327	NC_000017.10:40338839:TT:	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss3978838781, ss4311577931, ss5778610715	NC_000017.11:42186821:TT:	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
8317882759	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT	(self)
ss289325955	NC_000017.9:37592365:T:	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss2629026508, ss3015531477, ss3788203396, ss5222406325, ss5660101490	NC_000017.10:40338839:T:	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss4311577930, ss5303127740, ss5496184514, ss5778610713, ss5851808525	NC_000017.11:42186821:T:	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
8317882759	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss3978838779	NC_000017.11:42186822:T:	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT	(self)
ss5222406326	NC_000017.10:40338839::T	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
ss4311577925, ss5303127741, ss5778610714	NC_000017.11:42186821::T	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
8317882759	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
ss3978838780	NC_000017.11:42186823::T	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
ss95694045	NT_010783.15:5613009::T	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT	(self)
ss4311577926	NC_000017.11:42186821::TT	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT	(self)
8317882759	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT	(self)
ss4311577927	NC_000017.11:42186821::TTT	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT	(self)
8317882759	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT	(self)
ss4311577928	NC_000017.11:42186821::TTTT	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT	(self)
ss4311577929	NC_000017.11:42186821::TTTTT	NC_000017.11:42186821:TTTTTTTTTTTT… NC_000017.11:42186821:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs71157609

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs71157609