txid1681[Organism] - GEO DataSets

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Select item 2001758431.

Effects of housekeeping sortase disruption on Bifidibacterium bifidum toranscriptome

(Submitter supplied) To explore the molecular mechanism of B. bifidum adhesion, we compared transcriptomes among WT and non-adhesive mutants cultured in MRS or m-ILS medium.

Organism:: Bifidobacterium bifidum

Type:: Expression profiling by array

Platform:: GPL30211
8 Samples

Download data: TXT

Series

Accession:: GSE175843

ID:: 200175843

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000658292.

The cross talk occurring between bifidobacteria in the mammalian's gut microbiota

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Bifidobacterium breve 12L; Bifidobacterium adolescentis; Bifidobacterium bifidum PRL2010; Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088

Type:: Expression profiling by array

Platform:: GPL19766
20 Samples

Download data: TXT

Series

Accession:: GSE65829

ID:: 200065829

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000658283.

The cross talk occurring between bifidobacteria in the mammalian’s gut microbiota [PRL]

(Submitter supplied) We describe the molecular cross talk established under in vivo conditions between a set of human gut bifidobacterial commensals. Eleven groups of five conventional female 8-wk-old BALB/c mice taking a standard polysaccharide-rich Chow diet were administered a single daily dose of 109 CFU of either B. bifidum PRL2010, B. breve 12L , B. adolescentis 22L , B. longum subsp. infantis ATCC15697, or bifidobacterial couples, i.e., PRL2010-12L, PRL2010-22L, PRL2010-ATCC15696, 12L-22L, 12L-ATCC15697, 22L-ATCC15697, or a combination of all bifidobacterial strains. more...

Organism:: Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088; Bifidobacterium bifidum PRL2010; Bifidobacterium adolescentis; Bifidobacterium breve 12L

Type:: Expression profiling by array

Platform:: GPL19766
5 Samples

Download data: TXT

Series

Accession:: GSE65828

ID:: 200065828

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000658264.

The cross talk occurring between bifidobacteria in the mammalian’s gut microbiota [ATCC15697]

Organism:: Bifidobacterium bifidum PRL2010; Bifidobacterium breve 12L; Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088; Bifidobacterium adolescentis

Type:: Expression profiling by array

Platform:: GPL19766
5 Samples

Download data: TXT

Series

Accession:: GSE65826

ID:: 200065826

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000658255.

The cross talk occurring between bifidobacteria in the mammalian’s gut microbiota [22L]

Organism:: Bifidobacterium adolescentis; Bifidobacterium breve 12L; Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088; Bifidobacterium bifidum PRL2010

Type:: Expression profiling by array

Platform:: GPL19766
5 Samples

Download data: TXT

Series

Accession:: GSE65825

ID:: 200065825

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000658226.

The cross talk occurring between bifidobacteria in the mammalian’s gut microbiota [12L]

Organism:: Bifidobacterium breve 12L; Bifidobacterium bifidum PRL2010; Bifidobacterium adolescentis; Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088

Type:: Expression profiling by array

Platform:: GPL19766
5 Samples

Download data: TXT

Series

Accession:: GSE65822

ID:: 200065822

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000505067.

Molecular interaction of bifidobacteria with kefir grains

(Submitter supplied) We got insights into the B. bifidum PRL2010 genes whose expression resulted to be affected when bacterial cells were cultivated on kefir and kefiran as the unique carbon source.

Organism:: Bifidobacterium; Bifidobacterium bifidum

Type:: Expression profiling by array

Platform:: GPL17646
4 Samples

Download data: TXT

Series

Accession:: GSE50506

ID:: 200050506

Analyze with GEO2R

Select item 2000636618.

Molecular response of bifidobacteria to a cholesterol rich environment

(Submitter supplied) We investigated the capabilities of bifidobacteria to reduce the cholesterol level in the media, which clearly evidenced a high ratio of assimilation of this molecule by specific bifidobacterial strains including Bifidobacterium bifidum PRL2010. The transcriptomics of PRL2010 cells cultivated in the presence of cholesterol evidenced a significant higher expression of carriers as well as reductase encoding genes

Organism:: Bifidobacterium bifidum PRL2010

Type:: Expression profiling by array

Platform:: GPL13951
6 Samples

Download data: TXT

Series

Accession:: GSE63661

ID:: 200063661

Select item 2000590539.

RNA sequencing of Bifidobacterium bifidum SC555 in response to various substrates

(Submitter supplied) The purpose of this project was to determine the whole transcriptome response of Bifidobacterium bifidum SC555 to pooled and individual human milk oligosaccharides (HMO) relative to lactose

Organism:: Bifidobacterium bifidum

Type:: Expression profiling by high throughput sequencing

Platform:: GPL18891
20 Samples

Download data: TXT

Series

Accession:: GSE59053

ID:: 200059053

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20003644210.

Functional genomic analyses of Bifidobacterium bifidum PRL2010 highlight how this microorganism interact with the human host

(Submitter supplied) Bifidobacteria represents one of the dominant group of microorganisms colonizing the intestine of infants. However, the genetic determinants supporting the establishment and the interaction with the human hosts are still largely unknown. Most commensal bacteria interacting with eukaryotic hosts express adhesive molecules on their surfaces that modulate interaction with host cell receptors or with soluble macromolecules. more...

Organism:: Bifidobacterium bifidum; Bifidobacterium bifidum PRL2010

Type:: Expression profiling by array

Platform:: GPL13951
12 Samples

Download data: TXT

Series

Accession:: GSE36442

ID:: 200036442

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003083211.

Identification of reference genes for quantitative Real-Time PCR in Bifidobacterium bifidum PRL2010 based on transcriptome analysis

(Submitter supplied) In this study, we investigated the transcriptome of Bifidobacterium bifidum PRL2010 during in vitro growth by micro array technology. When B. bifidum PRL2010 was grown in liquid broth, 425 of the 1644 PRL2010 genes represented on the array were expressed in at least one of the three investigated growth phases, i.e., lag-, exponential and stationary phase. These transcriptional analyses identified a core in vitro transcriptome encompassing 150 genes, which resulted expressed in all phases. more...

Organism:: Bifidobacterium bifidum PRL2010; Bifidobacterium bifidum

Type:: Expression profiling by array

Platform:: GPL13951
4 Samples

Download data: TXT

Series

Accession:: GSE30832

ID:: 200030832

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 10003016412.

Agilent-069048 Bifidobacterium bifidum 0140801_Bbi

(Submitter supplied) Arrays of this design have barcodes that begin with 16069048 or 2569048. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. more...

Organism:: Bifidobacterium bifidum

Download data: TXT

Platform

Accession:: GPL30164

ID:: 100030164

Select item 10003021113.

Agilent-069048 Bifidobacterium bifidum 0140801_Bbi [Probe Name version]

(Submitter supplied) Arrays of this design have barcodes that begin with 16069048 or 2569048. Orientation: The ID column represents the Agilent Probe Name. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL30164. Protocol: see manufacturer's web site at http://www.agilent.com/

Organism:: Bifidobacterium bifidum

1 Series
8 Samples

Download data

Platform

Accession:: GPL30211

ID:: 100030211

Select item 10001976614.

Agilent-045525 Bifidobacterium array [Gene-level version]

(Submitter supplied) Array contains 4 Bifidobacterium species Protocol: see manufacturer's web site at http://www.agilent.com/

Organism:: Bifidobacterium adolescentis; Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088; Bifidobacterium bifidum PRL2010; Bifidobacterium breve 12L

5 Series
20 Samples

Download data

Platform

Accession:: GPL19766

ID:: 100019766

Select item 10001889115.

Illumina HiSeq 2500 (Bifidobacterium bifidum)

Organism:: Bifidobacterium bifidum

1 Series
20 Samples

Download data

Platform

Accession:: GPL18891

ID:: 100018891

Select item 10001395116.

Bifidobacterium bifidum PRL2010 array

(Submitter supplied) Probes are directly synthesized on a 90k Combimatrix array by an in situ oligo synthesis system developed by Combimatrix Corporation (Mukilteo, USA) using the Combimatrix CustomArray synthesizer. Standard synthesis protocol provided by Combimatrix was used.