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Platform GPL10812 Query DataSets for GPL10812
Status Public on Oct 15, 2010
Title UW_NimbleGen_Rat_321K_Array design 081105
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Rattus norvegicus
Manufacturer Nimblegen
Manufacture protocol http://www.nimblegen.com/
 
Description Rn4
 
Contributor(s) Svaren J, Gokey N
Submission date Aug 16, 2010
Last update date Jul 17, 2011
Contact name John Svaren
E-mail(s) [email protected]
Organization name University of Wisconsin
Department Comparative Biosciences
Lab Waisman Center
Street address 1500 Highland Ave.
City Madison
State/province WI
ZIP/Postal code 53705
Country USA
 
Samples (12) GSM580229, GSM580230, GSM580231, GSM580232, GSM580233, GSM580234 
Series (3)
GSE23648 Sciatic nerve FAIRE-chip and ChIP-Chip with Egr2/Krox20 and Sox10
GSE30823 H4IIE liver cell line ChIP-Chip with Egr1
GSE30890 P15 Rat Sciatic Nerve ChIP-Chip with NuRD complex components

Data table header descriptions
ID
SEQ_ID
CHROMOSOME
RANGE_GB
RANGE_START
LENGTH
SEQUENCE
RANGE_END

Data table
ID SEQ_ID CHROMOSOME RANGE_GB RANGE_START LENGTH SEQUENCE RANGE_END
CHR01FS146360133 chr1:146360035-146456634 chr1 NC_005100.2 146360133 50 TAGCAGGTGAGGTTAGTAGGTGAGGTTAGCAGAGCTTAATAGCCAGCTAG 146360182
CHR01FS146360143 chr1:146360035-146456634 chr1 NC_005100.2 146360143 50 GGTTAGTAGGTGAGGTTAGCAGAGCTTAATAGCCAGCTAGGCATGGTTGG 146360192
CHR01FS146360163 chr1:146360035-146456634 chr1 NC_005100.2 146360163 50 AGAGCTTAATAGCCAGCTAGGCATGGTTGGCACACACAAAGAAACACCAA 146360212
CHR01FS146360183 chr1:146360035-146456634 chr1 NC_005100.2 146360183 50 GCATGGTTGGCACACACAAAGAAACACCAAAGAAGGTTAGTGGGCTTGTG 146360232
CHR01FS146360198 chr1:146360035-146456634 chr1 NC_005100.2 146360198 50 ACAAAGAAACACCAAAGAAGGTTAGTGGGCTTGTGCTTAGAAGATGTGGG 146360247
CHR01FS146360213 chr1:146360035-146456634 chr1 NC_005100.2 146360213 50 AGAAGGTTAGTGGGCTTGTGCTTAGAAGATGTGGGGGAACAAGATGGCAG 146360262
CHR01FS146360233 chr1:146360035-146456634 chr1 NC_005100.2 146360233 50 CTTAGAAGATGTGGGGGAACAAGATGGCAGGTGAATTGGACCAGCAGTTC 146360282
CHR01FS146360248 chr1:146360035-146456634 chr1 NC_005100.2 146360248 50 GGAACAAGATGGCAGGTGAATTGGACCAGCAGTTCTTCCTGGGTTCTGGG 146360297
CHR01FS146360263 chr1:146360035-146456634 chr1 NC_005100.2 146360263 50 GTGAATTGGACCAGCAGTTCTTCCTGGGTTCTGGGACTCTGATGGGGAAG 146360312
CHR01FS146360283 chr1:146360035-146456634 chr1 NC_005100.2 146360283 50 TTCCTGGGTTCTGGGACTCTGATGGGGAAGACCAGGGATGAGAAGAGAAA 146360332
CHR01FS146360303 chr1:146360035-146456634 chr1 NC_005100.2 146360303 50 GATGGGGAAGACCAGGGATGAGAAGAGAAAGAGTCAAAAGCTGGGCTGAT 146360352
CHR01FS146360318 chr1:146360035-146456634 chr1 NC_005100.2 146360318 50 GGATGAGAAGAGAAAGAGTCAAAAGCTGGGCTGATGACCCAAGCTAGGGA 146360367
CHR01FS146360333 chr1:146360035-146456634 chr1 NC_005100.2 146360333 50 GAGTCAAAAGCTGGGCTGATGACCCAAGCTAGGGAGTCTATTAATCACAG 146360382
CHR01FS146360353 chr1:146360035-146456634 chr1 NC_005100.2 146360353 51 GACCCAAGCTAGGGAGTCTATTAATCACAGCTCCTTCTATACTCCTCAAAT 146360403
CHR01FS146360368 chr1:146360035-146456634 chr1 NC_005100.2 146360368 60 GTCTATTAATCACAGCTCCTTCTATACTCCTCAAATGAGGGAGCAGAAAACAAATAAATG 146360427
CHR01FS146360388 chr1:146360035-146456634 chr1 NC_005100.2 146360388 63 TCTATACTCCTCAAATGAGGGAGCAGAAAACAAATAAATGTTCATCAGACAGCAGAATCACAG 146360450
CHR01FS146360398 chr1:146360035-146456634 chr1 NC_005100.2 146360398 58 TCAAATGAGGGAGCAGAAAACAAATAAATGTTCATCAGACAGCAGAATCACAGGGAAG 146360455
CHR01FS146360418 chr1:146360035-146456634 chr1 NC_005100.2 146360418 52 CAAATAAATGTTCATCAGACAGCAGAATCACAGGGAAGCTCAGAGTAGAGCA 146360469
CHR01FS146360438 chr1:146360035-146456634 chr1 NC_005100.2 146360438 50 AGCAGAATCACAGGGAAGCTCAGAGTAGAGCAGCTCTCATTCCTCTTTTG 146360487
CHR01FS146360453 chr1:146360035-146456634 chr1 NC_005100.2 146360453 50 AAGCTCAGAGTAGAGCAGCTCTCATTCCTCTTTTGCAAGATACATGCTGG 146360502

Total number of rows: 320742

Table truncated, full table size 41819 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL10812.gff.gz 1.5 Mb (ftp)(http) GFF
GPL10812.ndf.gz 22.3 Mb (ftp)(http) NDF
GPL10812.pos.gz 2.8 Mb (ftp)(http) POS

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