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Platform GPL19375 Query DataSets for GPL19375
Status Public on Nov 01, 2014
Title Tohoku_Univ_2008-02_Sinorhizobium meliloti_60mer_4plex
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Sinorhizobium meliloti 1021
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description 2008-02-06_RDKK013_Smel_60mer_4plex.ndf
2008-02-06_RDKK013_Smel_60mer_4plex.ngd
 
Submission date Oct 31, 2014
Last update date Nov 01, 2014
Contact name Hisayuki Mitsui
Organization name Tohoku University
Department Graduate School of Life Sciences
Street address 2-1-1, Katahira, Aoba-ku
City Sendai
ZIP/Postal code 980-8577
Country Japan
 
Samples (20) GSM1535896, GSM1535897, GSM1535898, GSM1535899, GSM1535900, GSM1535901 
Series (1)
GSE62900 Expression analysis of Sinorhizobium meliloti 1021rpoH1 rpoH2 mutant during heat shock

Data table header descriptions
ID SEQ_ID
ORF Locus Tag
GENE_NAME
DESCRIPTION
ACCESSION
COMMENTS
GENE_ID Entrez Gene ID
Feature
FUNCTION
CHROMOSOME
Start
End
Strand

Data table
ID ORF GENE_NAME DESCRIPTION ACCESSION COMMENTS GENE_ID Feature FUNCTION CHROMOSOME Start End Strand
SMa0002 SMa0002 fdoG probable FdoG formate dehydrogenase-O alphasubunit NP_435247.1 1235225 CDS Small molecule metabolism; Energy metabolism,carbon NC_003037 1353 4457 +
SMa0005 SMa0005 fdoH probable FdoH formate dehydrogenase-O, betasubunit NP_435248.1 glimmer prediction; similar to E. coli fdoH 1235226 CDS Small molecule metabolism; Energy metabolism,carbon NC_003037 4454 5446 +
SMa0007 SMa0007 fdoI probable FdoI formate dehydrogenase-O,gammasubunit NP_435249.1 glimmer prediction; similar to E. coli fdoI 1235227 CDS Small molecule metabolism; Energy metabolism,carbon NC_003037 5424 6110 +
SMa0009 SMa0009 fdhE probable FdhE formate formation NP_435250.1 1235228 CDS Small molecule metabolism; Energy metabolism,carbon NC_003037 6149 7069 +
SMa0011 SMa0011 selA selenocysteine synthase NP_435251.1 catalyzes the formation ofselenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) andL-selenophosphate in selenoprotein biosynthesis 1235229 CDS Small molecule metabolism; aa-tRNAs NC_003037 7074 8474 +
SMa0013 SMa0013 hypothetical protein NP_435252.1 1235230 CDS Miscellaneous; Unknown NC_003037 8521 9255 +
SMa0015 SMa0015 selB SelB selenocysteine-specific elongation factor NP_435253.1 1235231 CDS Small molecule metabolism; aa-tRNAs NC_003037 9252 11252 +
SMa0017 SMa0017 hypothetical protein NP_435254.1 1235232 CDS Miscellaneous; Unknown NC_003037 11506 12063 +
SMa0018 SMa0018 TRm2011-2a transposase NP_435255.1 1235233 CDS Elements of external origin; Transposon-relatedfunctions NC_003037 12754 13161 +
SMa0020 SMa0020 TRm2011-2b transposase NP_435256.1 1235234 CDS Elements of external origin; Transposon-relatedfunctions NC_003037 13227 13700 +
SMa0021 SMa0021 hypothetical protein NP_435257.1 glimmer prediction, with response regulatorreceiver domain 1235235 CDS Elements of external origin; Transposon-relatedfunctions NC_003037 14450 15094 -
SMa0025 SMa0025 hypothetical protein NP_435258.1 glimmer prediction, C-terminus similar tohypothetical protein HI1048 - Haemophilus influenzae(strain Rd KW20) with transglutaminase-like superfamilydomain 1235237 CDS Miscellaneous; Hypothetical/Global homology NC_003037 16251 17378 -
SMa0026 SMa0026 hypothetical protein NP_435259.1 1235238 CDS Miscellaneous; Unknown NC_003037 17424 17852 -
SMa0028 SMa0028 selD selenophosphate synthetase NP_435260.1 catalyzes the formation of selenophosphate fromselenide and ATP 1235239 CDS Small molecule metabolism; Global functions NC_003037 17865 18914 -
SMa0031 SMa0031 hypothetical protein NP_435261.1 1235240 CDS Miscellaneous; Unknown NC_003037 19209 19436 -
SMa0034 SMa0034 possible protease NP_435262.1 glimmer prediction; partially similar to serralysin(Serratia protease) precursor 1235241 CDS Macromolecule metabolism; Macromoleculedegradation; degradation of proteins, peptides,glycopeptides NC_003037 19453 21108 -
SMa0036 SMa0036 putative ABC transporter ATP-binding protein NP_435263.1 glimmer prediction; similar to ABC transporter,ATP-binding protein 1235242 CDS Cell processes; Transport of small molecules NC_003037 21429 23051 +
SMa0039 SMa0039 probable LysR-family protein NP_435264.1 glimmer prediction; similar to LysR-familytranscriptional regulators with HTH domain 1235243 CDS Miscellaneous; Not classified regulator NC_003037 23398 24339 -
SMa0041 SMa0041 probable quinone oxidoreductase NP_435265.1 1235244 CDS Small molecule metabolism NC_003037 24465 25388 +
SMa0044 SMa0044 hypothetical protein NP_435266.1 glimmer prediction; start codon changed based oncodon usage pattern 1235245 CDS Miscellaneous; Unknown NC_003037 25417 25683 -

Total number of rows: 6205

Table truncated, full table size 1369 Kbytes.




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Supplementary file Size Download File type/resource
GPL19375_2008-02-06_RDKK013_Smel_60mer_4plex.ndf.gz 3.4 Mb (ftp)(http) NDF
GPL19375_2008-02-06_RDKK013_Smel_60mer_4plex.ngd.gz 280.2 Kb (ftp)(http) NGD

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