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Status
Public on Nov 30, 2006
Title
Lieb Lab at UNC-CH_Yeast Whole-genome Array (PCR-based)_for Buck MJ et al.
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Saccharomyces cerevisiae Manufacturer
Lieb Lab at UNC-CH
Manufacture protocol
see Iyer et al. 2001, Nature 409: 533-538
Support
glass
Coating
poly-L-lysine
Description
Whole-genome microarrays with PCR-amplified products represent ORFs, intergenic regions, and other noncoding regions (rDNA, tRNA, transposons, transposon long terminal repeats, telomeres, centromeres, and introns). Generally, each ORF was represented from start codon to stop codon. The intergenic regions consisted of the DNA between annotated ORFs divided such that PCR products were not longer than 1.5 kb, with a few exceptions. The noncoding regions conform to boundaries as annotated by the Saccharomyces Genome Database (SGD) as of the year 2000. Mitochondrial segments did not necessarily conform to annotated functional boundaries. This platform covers several print runs, in which print plates were arranged in different orders.
Web link
http://genome.unc.edu/ Contributor(s)
Buck MJ Submission date
Oct 11, 2006
Last update date
Nov 30, 2006
Contact name
Jason D. Lieb
E-mail(s)
[email protected] Phone
919-843-3228
Organization name
Univeristy of North Carolina at Chapel Hill
Department
Biology
Lab
Lieb
Street address
CB 3280
City
Chapel Hill
State/province
NC
ZIP/Postal code
27599
Country
USA
Samples (591)
GSM140972 , GSM140975 , GSM140976 , GSM140977 , GSM140978 , GSM140979
GSM140980 ,
GSM140981 ,
GSM141430 ,
GSM141431 ,
GSM141432 ,
GSM141433 ,
GSM141434 ,
GSM141435 ,
GSM141436 ,
GSM141437 ,
GSM141438 ,
GSM141439 ,
GSM141441 ,
GSM141442 ,
GSM141443 ,
GSM141444 ,
GSM141445 ,
GSM141446 ,
GSM141447 ,
GSM141448 ,
GSM141449 ,
GSM141450 ,
GSM141451 ,
GSM141452 ,
GSM141453 ,
GSM141454 ,
GSM141458 ,
GSM141459 ,
GSM141460 ,
GSM141461 ,
GSM141462 ,
GSM141463 ,
GSM141464 ,
GSM141465 ,
GSM141492 ,
GSM141493 ,
GSM141494 ,
GSM141495 ,
GSM141496 ,
GSM141497 ,
GSM141498 ,
GSM141499 ,
GSM141500 ,
GSM142103 ,
GSM142104 ,
GSM142105 ,
GSM142106 ,
GSM142107 ,
GSM142108 ,
GSM142109 ,
GSM142110 ,
GSM142111 ,
GSM142112 ,
GSM142113 ,
GSM142114 ,
GSM142115 ,
GSM142201 ,
GSM142202 ,
GSM142203 ,
GSM142204 ,
GSM142205 ,
GSM142206 ,
GSM142207 ,
GSM142208 ,
GSM142209 ,
GSM142210 ,
GSM142211 ,
GSM142212 ,
GSM142213 ,
GSM142214 ,
GSM142215 ,
GSM142226 ,
GSM142227 ,
GSM142228 ,
GSM142229 ,
GSM142230 ,
GSM142231 ,
GSM142232 ,
GSM142233 ,
GSM142234 ,
GSM142235 ,
GSM142236 ,
GSM142237 ,
GSM142238 ,
GSM142239 ,
GSM142322 ,
GSM142323 ,
GSM142324 ,
GSM142325 ,
GSM142326 ,
GSM142327 ,
GSM142328 ,
GSM142329 ,
GSM142330 ,
GSM142342 ,
GSM142343 ,
GSM142344 ,
GSM142345 ,
GSM142346 ,
GSM142347 ,
GSM155376 ,
GSM155378 ,
GSM155379 ,
GSM155380 ,
GSM155381 ,
GSM155382 ,
GSM155383 ,
GSM155384 ,
GSM155385 ,
GSM155386 ,
GSM155387 ,
GSM155388 ,
GSM155389 ,
GSM157394 ,
GSM157395 ,
GSM157396 ,
GSM157397 ,
GSM157398 ,
GSM157399 ,
GSM157400 ,
GSM157401 ,
GSM157402 ,
GSM157403 ,
GSM157404 ,
GSM160888 ,
GSM160889 ,
GSM160890 ,
GSM160891 ,
GSM160892 ,
GSM160893 ,
GSM160894 ,
GSM160895 ,
GSM160902 ,
GSM160903 ,
GSM160904 ,
GSM160905 ,
GSM160906 ,
GSM160907 ,
GSM160908 ,
GSM160909 ,
GSM160910 ,
GSM160911 ,
GSM160912 ,
GSM160913 ,
GSM160914 ,
GSM160915 ,
GSM160916 ,
GSM160917 ,
GSM160918 ,
GSM160919 ,
GSM160920 ,
GSM160921 ,
GSM160922 ,
GSM160923 ,
GSM160924 ,
GSM160925 ,
GSM160926 ,
GSM160927 ,
GSM160928 ,
GSM160929 ,
GSM160930 ,
GSM160931 ,
GSM160932 ,
GSM160933 ,
GSM160934 ,
GSM161149 ,
GSM161150 ,
GSM161151 ,
GSM161152 ,
GSM161154 ,
GSM161156 ,
GSM161157 ,
GSM161158 ,
GSM161161 ,
GSM161162 ,
GSM161164 ,
GSM161166 ,
GSM161168 ,
GSM161170 ,
GSM161172 ,
GSM161173 ,
GSM161175 ,
GSM161177 ,
GSM161178 ,
GSM161180 ,
GSM161183 ,
GSM161187 ,
GSM161188 ,
GSM161190 ,
GSM161193 ,
GSM161194 ,
GSM161195 ,
GSM256769 ,
GSM256771 ,
GSM256774 ,
GSM256775 ,
GSM256776 ,
GSM256777 ,
GSM256778 ,
GSM256779 ,
GSM256780 ,
GSM288258 ,
GSM288264 ,
GSM288265 ,
GSM288266 ,
GSM288267 ,
GSM288268 ,
GSM288269 ,
GSM288270 ,
GSM288271 ,
GSM288272 ,
GSM288273 ,
GSM288274 ,
GSM288275 ,
GSM288276 ,
GSM288277 ,
GSM348286 ,
GSM349732 ,
GSM349738 ,
GSM349750 ,
GSM356347 ,
GSM356348 ,
GSM356349 ,
GSM356350 ,
GSM356351 ,
GSM356352 ,
GSM356353 ,
GSM356354 ,
GSM356355 ,
GSM356356 ,
GSM356357 ,
GSM356358 ,
GSM356359 ,
GSM356360 ,
GSM356361 ,
GSM356362 ,
GSM356363 ,
GSM356364 ,
GSM356365 ,
GSM356366 ,
GSM356367 ,
GSM356368 ,
GSM356369 ,
GSM356370 ,
GSM356371 ,
GSM356372 ,
GSM356373 ,
GSM356374 ,
GSM356379 ,
GSM356380 ,
GSM356381 ,
GSM356382 ,
GSM356383 ,
GSM356384 ,
GSM356385 ,
GSM356386 ,
GSM356387 ,
GSM356388 ,
GSM356389 ,
GSM356390 ,
GSM356391 ,
GSM356392 ,
GSM356393 ,
GSM356394 ,
GSM356395 ,
GSM356396 ,
GSM356397 ,
GSM356398 ,
GSM356399 ,
GSM356400 ,
GSM364921 ,
GSM364922 ,
GSM364923 ,
GSM413948 ,
GSM413949 ,
GSM413950 ,
GSM413951 ,
GSM413959 ,
GSM413960 ,
GSM413961 ,
GSM413962 ,
GSM413963 ,
GSM413964 ,
GSM413965 ,
GSM413966 ,
GSM413967 ,
GSM413968 ,
GSM413969 ,
GSM414088 ,
GSM414089 ,
GSM414090 ,
GSM414170 ,
GSM414171 ,
GSM414172 ,
GSM414378 ,
GSM414379 ,
GSM414423 ,
GSM414449 ,
GSM414451 ,
GSM414458 ,
GSM414459 ,
GSM414460 ,
GSM414462 ,
GSM414464 ,
GSM414467 ,
GSM414469 ,
GSM414470 ,
GSM414471 ,
GSM414482 ,
GSM414486 ,
GSM414684 ,
GSM414685 ,
GSM414686 ,
GSM414688 ,
GSM414691 ,
GSM414692 ,
GSM414694 ,
GSM414697 ,
GSM414698 ,
GSM414702 ,
GSM414704 ,
GSM414705 ,
GSM438014 ,
GSM438016 ,
GSM438017 ,
GSM447129 ,
GSM447130 ,
GSM447131 ,
GSM447132 ,
GSM447133 ,
GSM447135 ,
GSM447136 ,
GSM447137 ,
GSM447138 ,
GSM447139 ,
GSM447140 ,
GSM447142 ,
GSM447143 ,
GSM447144 ,
GSM447145 ,
GSM447146 ,
GSM447147 ,
GSM447148 ,
GSM447149 ,
GSM447150 ,
GSM447151 ,
GSM447152 ,
GSM447153 ,
GSM447154 ,
GSM454566 ,
GSM454567 ,
GSM454568 ,
GSM454569 ,
GSM454570 ,
GSM454571 ,
GSM454572 ,
GSM454573 ,
GSM454574 ,
GSM454575 ,
GSM454576 ,
GSM454577 ,
GSM454578 ,
GSM454579 ,
GSM454580 ,
GSM454581 ,
GSM454582 ,
GSM454583 ,
GSM454584 ,
GSM454585 ,
GSM454586 ,
GSM454587 ,
GSM454588 ,
GSM454589 ,
GSM454590 ,
GSM454591 ,
GSM454592 ,
GSM677000 ,
GSM677001 ,
GSM677002 ,
GSM677003 ,
GSM677004 ,
GSM677005 ,
GSM677006 ,
GSM677007 ,
GSM677008 ,
GSM677009 ,
GSM677010 ,
GSM677011 ,
GSM677012 ,
GSM677013 ,
GSM677014 ,
GSM677015 ,
GSM677016 ,
GSM677017 ,
GSM677018 ,
GSM677019 ,
GSM677020 ,
GSM677021 ,
GSM677022 ,
GSM677023 ,
GSM677024 ,
GSM677025 ,
GSM677026 ,
GSM677027 ,
GSM677028 ,
GSM677029 ,
GSM677030 ,
GSM677031 ,
GSM677032 ,
GSM677033 ,
GSM677034 ,
GSM677035 ,
GSM677036 ,
GSM677037 ,
GSM677038 ,
GSM677039 ,
GSM677040 ,
GSM1947734 ,
GSM1947735 ,
GSM1947736 ,
GSM1947737 ,
GSM1947738 ,
GSM1947739 ,
GSM1947740 ,
GSM1947741 ,
GSM1947742 ,
GSM1947743 ,
GSM1947744 ,
GSM1947745 ,
GSM1947746 ,
GSM1947747 ,
GSM1947748 ,
GSM1947749 ,
GSM1947750 ,
GSM1947751 ,
GSM1947752 ,
GSM1947753 ,
GSM1947754 ,
GSM1947755 ,
GSM1947756 ,
GSM1947757 ,
GSM1947758 ,
GSM1947759 ,
GSM1947760 ,
GSM1947761 ,
GSM1947762 ,
GSM1947763 ,
GSM1947764 ,
GSM1947765 ,
GSM1947766 ,
GSM1947767 ,
GSM1947768 ,
GSM1947769 ,
GSM1947770 ,
GSM1947771 ,
GSM1947772 ,
GSM1947773 ,
GSM1947774 ,
GSM1947775 ,
GSM1947776 ,
GSM1947777 ,
GSM1947778 ,
GSM1947779 ,
GSM1947780 ,
GSM1947781 ,
GSM1947782 ,
GSM1947783 ,
GSM1947784 ,
GSM1947785 ,
GSM1947786 ,
GSM1947787 ,
GSM1947788 ,
GSM1947789 ,
GSM1947790 ,
GSM1947791 ,
GSM1947792 ,
GSM1947793 ,
GSM1947794 ,
GSM1947795 ,
GSM1947796 ,
GSM1947809 ,
GSM1947810 ,
GSM1947811 ,
GSM1947812 ,
GSM1947813 ,
GSM1947814 ,
GSM1947815 ,
GSM1947816 ,
GSM1947817 ,
GSM1947818 ,
GSM1947819 ,
GSM1947820 ,
GSM1947821 ,
GSM1947822 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (20)
GSE5948 A chromatin-mediated mechanism for specification of conditional transcription factor targets
GSE6245 Loss of a histone deacetylase dramatically alters the genomic distribution of Spo11p-catalyzed DNA breaks in yeast
GSE6842 Global analysis of the relationship between the binding of Bas1p and meiosis-specific double-strand DNA breaks in yeast
GSE6984 CGH detection of chromosomal rearrangements in diploid yeast cells exposed to ionizing radiation
GSE6991 Band-array detection of chromosomal rearrangements in diploid yeast cells exposed to ionizing radiation
GSE10152 Chronic Oxidative DNA Damage Due to DNA Repair Defects Causes Chromosomal Instability in Saccharomyces cerevisiae
GSE11425 Chromosome fragility at the expanded GAA/TTC tracks depends on repeat orientation and requires mismatch repair system.
GSE14223 Systematic identification of balanced transposition polymorphisms in Saccharomyces cerevisiae
GSE14601 Comparative Genomic Hybridization between S. cerevisaie strains JAY270 and S288c.
GSE16502 Analysis of genome rearrangements in S. cerevisiae strains with low levels of DNA polymerase alpha
GSE17578 A Saccharomyces cerevisiae strain widely used in bioethanol production
GSE17903 Elevated Levels of Aneuploidy and Chromosome Rearrangements are Separable Genome Instability Events
GSE18181 Meiotic time-course expression profile
GSE18256 Meiotic time course: open chromatin and expression profile
GSE27377 Rap1 Turnover Galactose Induction Time Course
GSE75257 Meiosis timecourse expression profile
GSE75259 Meiosis timecourse Rap1-depletion expression profile
GSE75260 Meiosis timecourse Rap1-depletion Rap1 ChIP-chip
GSE75261 Meiosis timecourse Rap1 ChIP-chip
GSE75263 Meiosis timecourse Rap1
Data table header descriptions ID UNC Unique ID from UNC microarray database
FEATURE_NAME annotated name for each feature, from SGD
CHR Chromsome Number
START Cordinate of start
STOP Cordinate of start
FAILED PCR failed (1,2,3) - Failed, (0) - Good
ORF open reading frame in Entrez Gene
SPOT_ID identifies spots with no ORF entry
15397 650 Kbytes .Supplementary file Size Download File type/resource GPL4414_BRMB.gal.gz
116.4 Kb
(ftp) (http) GAL
GPL4414_GSM.gal.gz
113.9 Kb
(ftp) (http) GAL
GPL4414_PM.gal.gz
121.9 Kb
(ftp) (http) GAL
GPL4414_YOI_N.gal.gz
123.8 Kb
(ftp) (http) GAL
GPL4414_yOIH_Q.gal.gz
133.7 Kb
(ftp) (http) GAL
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