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Status
Public on Jul 25, 2008
Title
NimbleGen C_elegans_WS170_Tiling_Iso_HX1 tiling design
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Caenorhabditis elegans Manufacturer
NimbleGen Systems Inc.
Manufacture protocol
http://www.nimblegen.com/products/chip/index.html
Description
Tiling array using NimbleGen platform (DesignID=6112). WormBase release WS170. Complete tiling of pseudo-chromosomes; no filtering; isothermal (target tm=76); mean probe length=54 (range=50 to 75); mean distance between probes=-6 (range=-18 to 1111); all probes on forward strand.
Web link
http://www.nimblegen.com Contributor(s)
Meyer B , Henikoff S Submission date
Jul 25, 2008
Last update date
Feb 24, 2012
Contact name
Jorja Henikoff
E-mail(s)
[email protected] Phone
206-667-4850
Organization name
Fred Hutchinson Cancer Research Center
Department
Basic Sciences
Lab
Henikoff
Street address
1100 Fairview AV N, A1-162
City
Seattle
State/province
WA
ZIP/Postal code
98109-1024
Country
USA
Samples (35)
GSM365606 , GSM468560 , GSM468561 , GSM468563 , GSM468564 , GSM468565
GSM468566 ,
GSM468567 ,
GSM468568 ,
GSM468569 ,
GSM468570 ,
GSM468571 ,
GSM468572 ,
GSM468573 ,
GSM468574 ,
GSM468575 ,
GSM468576 ,
GSM468577 ,
GSM496403 ,
GSM624893 ,
GSM624894 ,
GSM777720 ,
GSM777721 ,
GSM777722 ,
GSM777723 ,
GSM777724 ,
GSM777725 ,
GSM777726 ,
GSM777727 ,
GSM836187 ,
GSM836188 ,
GSM836189 ,
GSM836190 ,
GSM836191 ,
GSM836192 Series (5)
GSE14640 A condensin-like dosage compensation complex acts at a distance to control expression throughout the genome
GSE14651 DCC binding and function (ChIP-chip: DPY-27)
GSE18898 A native chromatin purification system for epigenomic profiling in C. elegans
GSE25391 N2_Worm_Embryo_mRNA_Expression
GSE31602 Tissue-specific nuclei purification from animal models for genome-wide expression and chromatin profiling.
Data table header descriptions ID NimbleGen PROBE_ID, FS=forward strand, RS=reverse strand.
CHR Chromosome
RANGE_GB RANGE_START Start position of the probe within chromosome
RANGE_END End position of the probe within chromosome
SEQUENCE DNA sequence synthesized on the array
RANGE_STRAND
Data table ID CHR RANGE_GB RANGE_START RANGE_END SEQUENCE RANGE_STRAND IFS000000001
I
NC_003279.5
1
50
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGC
+
IFS000000047
I
NC_003279.5
47
96
AAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA
+
IFS000000093
I
NC_003279.5
93
142
CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCT
+
IFS000000139
I
NC_003279.5
139
188
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGC
+
IFS000000185
I
NC_003279.5
185
234
AAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA
+
IFS000000231
I
NC_003279.5
231
280
CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCT
+
IFS000000277
I
NC_003279.5
277
326
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGC
+
IFS000000323
I
NC_003279.5
323
372
AAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA
+
IFS000000369
I
NC_003279.5
369
418
CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCT
+
IFS000000415
I
NC_003279.5
415
466
GCCTAAGCCTAAGCCTAAAAAATTGAGATAAGAAAACATTTTACTTTTTCAA
+
IFS000000461
I
NC_003279.5
461
511
TTTCAAAATTGTTTTCATGCTAAATTCAAAACGTTTTTTTTTTAGTGAAGC
+
IFS000000507
I
NC_003279.5
507
556
GAAGCTTCTAGATATTTGGCGGGTACCTCTAATTTTGCCTGCCTGCCAAC
+
IFS000000553
I
NC_003279.5
553
602
CAACCTATATGCTCCTGTGTTTAGGCCTAATACTAAGCCTAAGCCTAAGC
+
IFS000000599
I
NC_003279.5
599
653
AAGCCTAATACTAAGCCTAAGCCTAAGACTAAGCCTAATACTAAGCCTAAGCCTA
+
IFS000000645
I
NC_003279.5
645
699
CTAAGCCTAAGACTAAGCCTAAGACTAAGCCTAAGACTAAGCCTAATACTAAGCC
+
IFS000000691
I
NC_003279.5
691
744
TACTAAGCCTAAGCCTAAGACTAAGCCTAAGCCTAATACTAAGCCTAAGCCTAA
+
IFS000000737
I
NC_003279.5
737
791
AAGCCTAAGACTAAGCCTAATACTAAGCCTAAGCCTAAGACTAAGCCTAAGACTA
+
IFS000000783
I
NC_003279.5
783
837
CTAAGACTAAGCCTAAGACTAAGCCTAATACTAAGCCTAAGCCTAAGACTAAGCC
+
IFS000000829
I
NC_003279.5
829
884
GACTAAGCCTAAGCCTAAAAGAATATGGTAGCTACAGAAACGGTAGTACACTCTTC
+
IFS000000875
I
NC_003279.5
875
928
TACACTCTTCTGAAAATACAAAAAATTTGCAATTTTTATAGCTAGGGCACTTTT
+
2143307 213553 Kbytes .Supplementary file Size Download File type/resource GPL7098.WS190.txt.gz
18.5 Mb
(ftp) (http) TXT
GPL7098.WS220.gff.gz
20.9 Mb
(ftp) (http) GFF
GPL7098.ndf.gz
98.5 Mb
(ftp) (http) NDF
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