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Series GSE1934 Query DataSets for GSE1934
Status Public on Nov 06, 2004
Title Ifh1 activates RP genes
Organism Saccharomyces cerevisiae
Experiment type Expression profiling by array
Summary Experiment Design:
•Type of experiment: time course after GAL (galactose) induction
•Experimental factor: time, genotype
•Number of hybridizations performed in the experiment: 24 (eight conditions with three biological replicates each)


Samples used, extract preparation and labeling:
•The origin of the biological sample:
Species: S. cerevisiae
Cell type:
wild-type (YSS37, IFH1-13myc-TRP1, MATa)
UASIFH1::HIS3-UASGAL1 (YSS89, UASGAL1-IFH1-13myc-TRP1, MATa)
•Growth conditions: log phase (2x107/mL) at 30°C in YPLG medium, then addition of Galactose to 2%
•Treatments: all cells were harvested by rapid centrifugation at 4°C then flash frozen in liquid nitrogen.
Keywords = IFH1
Keywords = Transcriptional control of RP genes
Keywords: time-course
 
 
Contributor(s) Schawalder SB, Kabani M, Choudhurry U, Howald I, Werner M, Shore D
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Nov 05, 2004
Last update date Jul 01, 2016
Contact name Stephan B. Schawalder
E-mail(s) [email protected]
Phone +41 22 379 61 77
Organization name University of Geneva
Department Departement of Molecular biology
Lab Group Shore
Street address Quai Ansermet 30
City Geneva
ZIP/Postal code 1211
Country Switzerland
 
Platforms (1)
GPL90 [YG_S98] Affymetrix Yeast Genome S98 Array
Samples (24)
GSM34678 YSS37, T=0
GSM34679 YSS37, T=30
GSM34680 YSS37, T=60
Relations
BioProject PRJNA90421

Change in gene expression following GAL induction header descriptions
Probe Set
Gene Symbol
GenBank
SGD
WT - 30 vs 0
WT - 60 vs 0
UAS_GAL1-IFH1 - 20 vs 0
UAS_GAL1-IFH1 - 30 vs 0
UAS_GAL1-IFH1 - 40 vs 0
UAS_GAL1-IFH1 - 60 vs 0

Data table
Probe Set Gene Symbol GenBank SGD WT - 30 vs 0 WT - 60 vs 0 UAS_GAL1-IFH1 - 20 vs 0 UAS_GAL1-IFH1 - 30 vs 0 UAS_GAL1-IFH1 - 40 vs 0 UAS_GAL1-IFH1 - 60 vs 0
Fold Change t Test Pvalue # Increase / Decrease Fold Change t Test Pvalue # Increase / Decrease Fold Change t Test Pvalue # Increase / Decrease Fold Change t Test Pvalue # Increase / Decrease Fold Change t Test Pvalue # Increase / Decrease Fold Change t Test Pvalue # Increase / Decrease
10000_at --- YLR331C S0004323 -2.18 0.3272 0 0 -1.43 0.6491 0 0 2.02 0.1306 0 0 2.30 0.1882 0 0 2.94 0.1793 0 0 1.95 0.2301 0 0
10001_at MID2 YLR332W S0004324 -1.02 0.9010 3 1 1.02 0.8589 0 0 -1.52 0.0070 0 9 -1.12 0.0681 0 0 -1.03 0.2309 0 0 -1.17 0.0362 0 3
10002_i_at RPS25B YLR333C S0004325 1.35 0.1727 0 0 1.43 0.1248 0 0 1.65 0.0046 0 0 1.95 0.0734 0 0 1.69 0.0030 0 0 1.45 0.0330 0 0
10003_f_at RPS25B YLR333C S0004325 1.31 0.0016 7 0 1.45 0.0510 6 0 1.92 0.0018 9 0 3.13 0.0001 9 0 2.68 0.0002 9 0 2.44 0.0001 9 0
10004_at --- YLR334C S0004326 1.50 0.4204 0 0 3.32 0.3465 3 0 -1.12 0.5185 0 0 1.47 0.6495 0 0 1.19 0.4970 0 0 -1.07 0.7769 0 0
10005_at NUP2 YLR335W S0004327 1.13 0.4856 1 0 1.39 0.0426 6 0 1.18 0.5124 3 0 1.50 0.0641 6 0 1.19 0.3477 3 0 1.40 0.1002 3 0
10006_at SGD1 YLR336C S0004328 1.69 0.0795 8 0 1.75 0.1919 9 0 1.11 0.7298 0 0 1.92 0.0048 9 0 1.88 0.0094 6 0 1.75 0.0804 6 0
10007_at VRP1 YLR337C S0004329 -1.39 0.0424 0 7 -1.27 0.0206 0 3 -1.17 0.0929 0 3 -1.28 0.0171 0 6 -1.52 0.0039 0 9 -1.34 0.0143 0 6
10008_at --- YLR338W S0004330 1.56 0.3064 0 0 1.41 0.4019 3 0 1.03 0.5302 0 0 1.64 0.9540 0 0 -1.06 0.5387 0 0 -1.11 0.5585 0 0
10009_at --- YLR339C S0004331 2.81 0.0302 0 0 2.21 0.2843 0 0 2.16 0.1173 3 0 1.68 0.4020 3 0 2.32 0.2592 3 0 3.43 0.0257 3 0
10010_at ATP14 YLR295C S0004286 -1.06 0.6002 0 2 -1.15 0.3600 0 3 -1.28 0.1147 0 3 -1.47 0.0227 0 9 -1.66 0.0221 0 9 -1.50 0.0357 0 9
10011_at --- YLR296W S0004287 1.85 0.0099 5 0 1.58 0.0668 3 0 -1.64 0.5855 0 3 -1.81 0.3759 0 3 -2.05 0.0382 0 6 -2.13 0.0563 0 6
10012_at --- YLR297W S0004288 -1.17 0.5077 1 4 -1.13 0.3274 0 0 -3.48 0.0260 0 9 -4.56 0.0224 0 9 -2.44 0.0309 0 9 -5.53 0.0149 0 9
10013_at YHC1 YLR298C S0004289 1.12 0.1996 0 0 1.24 0.0993 3 0 1.02 0.6222 0 0 1.02 0.1757 0 0 1.26 0.4704 3 0 1.20 0.5225 0 0
10014_at ECM38 YLR299W S0004290 -1.73 0.0008 0 8 -1.29 0.5452 0 3 -1.53 0.0069 0 9 -2.92 0.0000 0 9 -2.00 0.0003 0 9 -1.37 0.0338 0 9
10015_at EXG1 YLR300W S0004291 1.87 0.0294 8 0 2.23 0.0090 9 0 -1.37 0.1170 0 6 -1.15 0.7809 0 3 -1.02 0.1349 0 0 -1.48 0.1458 0 9
10016_at --- YLR301W S0004292 1.55 0.0077 9 0 2.16 0.0074 9 0 1.11 0.7791 0 0 1.15 0.7218 0 0 1.26 0.6442 0 0 1.46 0.0752 9 0
10017_at --- YLR302C S0004293 1.60 0.2861 0 0 1.77 0.2441 0 0 -2.00 0.4315 0 0 -1.75 0.1149 0 0 -2.87 0.0248 0 0 -1.18 0.6143 0 0
10018_at MET17 YLR303W S0004294 1.20 0.1854 3 0 -1.09 0.5660 0 3 -1.73 0.0017 0 9 -2.14 0.0028 0 9 -1.27 0.0132 0 6 -2.58 0.0011 0 9

Total number of rows: 9336

Table truncated, full table size 1159 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE1934_RAW.tar 44.6 Mb (http)(custom) TAR (of CEL, EXP, RPT)

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