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GEO accession:
Series GSE25533
Query DataSets for GSE25533
Status
Public on Dec 18, 2011
Title
A chromatin-modifying function of JNK during embryonic stem cell differentiation
Organism
Mus musculus
Experiment type
Expression profiling by array
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Contributor(s)
Tiwari V
,
Stadler MB
,
Wirbelauer C
,
Paro R
,
Schübeler D
,
Beisel C
Citation(s)
22179133
,
22474351
Submission date
Nov 22, 2010
Last update date
May 15, 2019
Contact name
Dirk Schuebeler
Organization name
Friedrich Miescher Institute for Biomedical Research
Street address
Maulbeerstrasse 66
City
Basel
ZIP/Postal code
4058
Country
Switzerland
Platforms (2)
GPL6246
[MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version]
GPL9250
Illumina Genome Analyzer II (Mus musculus)
Samples (43)
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More...
GSM627605
DMSO_batch1_a [Affy]
GSM627606
DMSO_batch1_b [Affy]
GSM627607
DMSO_batch2_c [Affy]
GSM627608
DMSO_batch2_d [Affy]
GSM627609
DMSO_batch2_e [Affy]
GSM627610
JNKi_batch1_a [Affy]
GSM627611
JNKi_batch1_b [Affy]
GSM627612
JNKi_batch2_c [Affy]
GSM627613
JNKi_batch2_d [Affy]
GSM627614
JNKi_batch2_e [Affy]
GSM632013
ES [RNA_Seq]
GSM632014
NP [RNA_Seq]
GSM632015
TN [RNA_Seq]
GSM632032
ES_H3K27me3_technical_replicate_a1 [ChIP-Seq]
GSM632033
ES_H3K27me3_technical _replicate_a2 [ChIP-Seq]
GSM632034
ES_H3K27me3_biological_replicate_b1 [ChIP-Seq]
GSM632035
ES_H3K4me2 [ChIP-Seq]
GSM632036
ES_JNK13_biological_replicate_a [ChIP-Seq]
GSM632037
ES_JNK13_biological_replicate_b [ChIP-Seq]
GSM632038
ES_NFYA_biological_replicate_a [ChIP-Seq]
GSM632039
ES_NFYA_biological_replicate_b [ChIP-Seq]
GSM632040
ES_PolII [ChIP-Seq]
GSM632041
Input [ChIP-Seq]
GSM632042
NP_H3K27me3_technical_replicate_a1 [ChIP-Seq]
GSM632043
NP_H3K27me3_technical _replicate_a2 [ChIP-Seq]
GSM632044
NP_H3K27me3_biological_replicate_b1 [ChIP-Seq]
GSM632045
NP_H3K4me2 [ChIP-Seq]
GSM632046
NP_JNK13_biological_replicate_a [ChIP-Seq]
GSM632047
NP_JNK13_biological_replicate_b [ChIP-Seq]
GSM632048
NP_NFYA_biological_replicate_a [ChIP-Seq]
GSM632049
NP_NFYA_biological_replicate_b [ChIP-Seq]
GSM632050
NP_PolII [ChIP-Seq]
GSM632051
TN_H3K27me3_technical_replicate_a1 [ChIP-Seq]
GSM632052
TN_H3K27me3_technical _replicate_a2 [ChIP-Seq]
GSM632053
TN_H3K27me3_biological_replicate_b1 [ChIP-Seq]
GSM632054
TN_H3K4me2 [ChIP-Seq]
GSM632055
TN_JNK13_biological_replicate_a [ChIP-Seq]
GSM632056
TN_JNK13_biological_replicate_b [ChIP-Seq]
GSM632057
TN_NFYA_biological_replicate_a [ChIP-Seq]
GSM632058
TN_NFYA_biological_replicate_b [ChIP-Seq]
GSM632059
TN_PolII [ChIP-Seq]
GSM768537
TN_DMSO_JNK13 [ChIP-Seq]
GSM768538
TN_JNKi_JNK1/3 [ChIP-Seq]
This SuperSeries is composed of the following SubSeries:
GSE25529
Expression data from DMSO and SP600125 treated neurons
GSE25532
A chromatin-modifying function of JNK during stem cell differentiation
Relations
BioProject
PRJNA134003
Download family
Format
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TXT
Supplementary file
Size
Download
File type/resource
GSE25533_RAW.tar
490.8 Mb
(http)
(custom)
TAR (of CEL, WIG)
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