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| Status |
Public on Nov 26, 2013 |
| Title |
Comparative expression analysis of the Arabidopsis strigolactone (SL)-response mutant, max2-3, and wild type (WT) plants (Col-0) under dehydration conditions. |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
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| Summary |
To understand the role of SL-signaling components in water stress response, we have carried out comparative expression analysis of the SL-response max2-3 mutant and WT plants under dehydration and well-watered (control) conditions. Aligent’s whole Arabidopsis Gene Expression Microarray (G2519F-021169, V4, 4x44K) was used.
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| Overall design |
Two-week-old WT and max2-3 mutant plants were transferred from GM plates to soil and grown for 10 additional day. The aerial parts of 24-d-old plants were detached and exposed to dehydration on KimTowel papers for 0 (well-watered, control), 2 and 4 h. All rosette leaves of independent 24-d-old plants were collected. Total RNA was prepared and used for the microarray hybridization. Three independent biological replicates were used for each plant sample.
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| Contributor(s) |
Ha CV, Tanaka M, Seki M, Tran LP |
| Citation(s) |
24379380, 32669036 |
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| Submission date |
Jul 17, 2013 |
| Last update date |
Nov 03, 2021 |
| Contact name |
chien Van ha |
| E-mail(s) |
[email protected]
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| Organization name |
texas tech university
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| Department |
IGCAST
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| Lab |
Tran
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| Street address |
1006 Carton Avenue, Box 43135
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| City |
Lubbock |
| State/province |
TX |
| ZIP/Postal code |
79409 |
| Country |
USA |
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| Platforms (1) |
| GPL12621 |
Agilent-021169 Arabidopsis 4 Oligo Microarray (V4) (Probe Name version) |
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| Samples (18)
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| GSM1187308 |
WT, dehydrated 2h, replicate 1 |
| GSM1187309 |
WT, dehydrated 2h, replicate 2 |
| GSM1187310 |
WT, dehydrated 2h, replicate 3 |
| GSM1187311 |
WT, dehydrated 4h, replicate 1 |
| GSM1187312 |
WT, dehydrated 4h, replicate 2 |
| GSM1187313 |
WT, dehydrated 4h, replicate 3 |
| GSM1187314 |
max2-3, well-watered (0h), replicate 1 |
| GSM1187315 |
max2-3, well-watered (0h), replicate 2 |
| GSM1187316 |
max2-3, well-watered (0h), replicate 3 |
| GSM1187317 |
max2-3, dehydrated 2h, replicate 1 |
| GSM1187318 |
max2-3, dehydrated 2h, replicate 2 |
| GSM1187319 |
max2-3, dehydrated 2h, replicate 3 |
| GSM1187320 |
max2-3, dehydrated 4h, replicate 1 |
| GSM1187321 |
max2-3, dehydrated 4h, replicate 2 |
| GSM1187322 |
max2-3, dehydrated 4h, replicate 3 |
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| Relations |
| BioProject |
PRJNA212382 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE48949_RAW.tar |
161.5 Mb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
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