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Series GSE52838 Query DataSets for GSE52838
Status Public on Jan 01, 2014
Title Transcription factor Achaete-Scute homologue 2 initiates T follicular helper cell development [array]
Organism Mus musculus
Experiment type Expression profiling by array
Summary In immune responses, activated T cells migrate to B cell follicles and develop to T follicular helper (Tfh) cells, a new subset of CD4+ T cells specialized in providing help to B lymphocytes in the induction of germinal centers 1-3. Although Bcl6 has been shown to be essential in Tfh cell function, it may not regulate the initial migration of T cells 4 or the induction of Tfh program as exampled by CXCR5 upregulation 5. Here, we show that the Achaete-Scute homologue 2 (Ascl2) gene that encodes a basic helix-loop-helix (bHLH) transcription factor 6, is selectively upregulated in its expression in Tfh cells. Ectopic expression of Ascl2 uniquely upregulates CXCR5 but not Bcl6 and downregulates CCR7 expression in T cells in vitro and accelerates T cell migration to the follicles and Tfh cell development in vivo. Combined transcriptome profiling and genome-wide occupancy analysis indicate that Ascl2 directly regulates Tfh-related genes while inhibits expression of Th1 and Th17 genes. Acute deletion of Ascl2 as well as blockade of its function with the Id3 protein in peripheral CD4+ T cells results in a failure in Tfh cell development and the germinal center response. Conversely, mutation of Id3, known to cause antibody-mediated autoimmunity, greatly enhances Tfh cell generation. Thus, Ascl2 critically and directly initiates Tfh cell development.
 
Overall design Decide gene expression patterns of CD4+ T cells with overexpressed Ascl2 or Tfh cells
 
Contributor(s) Liu X, Yan X, Wei L, Dong C
Citation(s) 24463518
Submission date Nov 29, 2013
Last update date Mar 04, 2019
Contact name Lai Wei
E-mail(s) [email protected]
Phone 3014961480
Organization name NIH/NEI/NCCAM
Street address 10 Center Dr. Room 2B47
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL6246 [MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version]
Samples (7)
GSM1276930 empty vector transfected CD4+ T cells, biological rep1
GSM1276931 empty vector transfected CD4+ T cells, biological rep2
GSM1276932 Ascl2 vector transfected CD4+ T cells, biological rep1
This SubSeries is part of SuperSeries:
GSE52840 Transcription factor Achaete-Scute homologue 2 initiates T follicular helper cell development
Relations
BioProject PRJNA230275

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE52838_RAW.tar 29.7 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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