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GEO accession:
Series GSE80602
Query DataSets for GSE80602
Status
Public on Jun 20, 2017
Title
AML1-ETO induces leukemia via C/D box snoRNA/RNPs.
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by array
Non-coding RNA profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
28650479
Submission date
Apr 25, 2016
Last update date
May 15, 2019
Contact name
Christian Rohde
E-mail(s)
[email protected]
Organization name
Heidelberg University
Lab
Molecular Hematology and Oncology
Street address
Im Neuenheimer Feld 410
City
Heidelberg
ZIP/Postal code
69120
Country
Germany
Platforms (4)
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GPL6246
[MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version]
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL15456
Illumina HiScanSQ (Homo sapiens)
GPL16173
Illumina HiScanSQ (Mus musculus)
Samples (94)
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GSM2129654
Primary diagnosis 003-001
GSM2129655
Primary diagnosis 003-003
GSM2129656
Primary diagnosis 003-004
GSM2129657
Primary diagnosis 005-002
GSM2129658
Primary diagnosis 005-003
GSM2129659
Primary diagnosis 005-005
GSM2129660
Primary diagnosis 005-007
GSM2129661
Primary diagnosis 005-008
GSM2129662
Primary diagnosis 005-009
GSM2129663
Primary diagnosis 005-010
GSM2129664
Primary diagnosis 005-011
GSM2129665
Primary diagnosis 005-012
GSM2129666
Primary diagnosis 009-002
GSM2129667
Primary diagnosis 009-003
GSM2129668
Primary diagnosis 009-006
GSM2129669
Primary diagnosis 009-009
GSM2129670
Primary diagnosis 014-001
GSM2129671
Primary diagnosis 014-002
GSM2129672
Primary diagnosis 014-003
GSM2129673
Primary diagnosis 014-005
GSM2129674
Primary diagnosis 014-006
GSM2129675
Primary diagnosis 014-007
GSM2129676
Primary diagnosis 016-002
GSM2129677
Primary diagnosis 017-001
GSM2129678
Primary diagnosis 017-003
GSM2129679
Primary diagnosis 035-001
GSM2129680
Primary diagnosis 035-003
GSM2129681
Primary diagnosis 036-001
GSM2129682
Primary diagnosis 036-004
GSM2129683
Primary diagnosis 036-005
GSM2129684
Primary diagnosis 043-004
GSM2129685
Primary diagnosis 043-006
GSM2129686
Primary diagnosis 043-007
GSM2129687
Primary diagnosis 043-008
GSM2129688
Primary diagnosis 053-005
GSM2129689
Primary diagnosis 053-006
GSM2129690
Primary diagnosis 053-009
GSM2129691
Primary diagnosis 053-010
GSM2129692
Primary diagnosis 057-005
GSM2129693
Primary diagnosis 057-008
GSM2129694
Primary diagnosis 057-011
GSM2129695
Primary diagnosis 057-013
GSM2129696
Primary diagnosis 057-016
GSM2129697
Primary diagnosis 057-017
GSM2129698
Primary diagnosis 057-019
GSM2129699
Primary diagnosis 057-021
GSM2129700
Primary diagnosis 057-026
GSM2129701
Primary diagnosis 057-029
GSM2129702
Primary diagnosis 074-002
GSM2129703
Primary diagnosis 080-002
GSM2129704
Primary diagnosis 080-003
GSM2129705
Primary diagnosis 088-001
GSM2129706
Primary diagnosis 109-006
GSM2129707
Primary diagnosis 114-001
GSM2129708
Primary diagnosis 118-001
GSM2129709
Primary diagnosis 118-002
GSM2129710
Primary diagnosis 120-001
GSM2129711
Primary diagnosis 120-002
GSM2129712
Primary diagnosis 121-005
GSM2129713
Primary diagnosis 121-007
GSM2129714
Primary diagnosis 121-008
GSM2129715
Primary diagnosis 121-009
GSM2129716
Primary diagnosis 133-001
GSM2129717
Kasumi-1 cell line with shRNA against human AES ShAES
GSM2129718
Kasumi-1 cell line control Shctr
GSM2129719
Kasumi-1 cell line with shRNA against DDX21 shDDX21
GSM2129720
Kasumi-1 cell line control shLuc
GSM2129721
primary mouse lineage negative bone marrow cells retrovirally transduced with AML-ETO9a MIG_AML_ETO9a
GSM2129722
primary mouse lineage negative bone marrow cells retrovirally transduced with MLL-AF9 MIG_MLL_AF9
GSM2129723
primary mouse lineage negative bone marrow cells retrovirally transduced with myc MIG_MYC
GSM2129724
primary mouse lineage negative bone marrow cells retrovirally transduced with empty vector MIG_rep2
GSM2129725
primary mouse lineage negative bone marrow cells retrovirally transduced with empty vector MIG_rep1
GSM2131077
AE9a leukemia blast, AES wildtype replicate 1
GSM2131078
AE9a leukemia blast, AES wildtype replicate 2
GSM2131079
AE9a leukemia blast, AES wildtype replicate 3
GSM2131080
AE9a leukemia blast, AES knockout replicate 1
GSM2131081
AE9a leukemia blast, AES knockout replicate 2
GSM2131082
AE9a leukemia blast, AES knockout replicate 3
GSM2131107
AES RIP
GSM2131108
DDX21 RIP replicate 1
GSM2131109
DDX21 RIP replicate 2
GSM2131110
DDX21 RIP replicate 3
GSM2131111
IgG RIP replicate 1
GSM2131112
IgG RIP replicate 2
GSM2131113
nascent RNA-Seq shcontrol replicate 1
GSM2131114
nascent RNA-Seq shcontrol replicate 2
GSM2131115
nascent RNA-Seq shAES replicate 1
GSM2131116
nascent RNA-Seq shAES replicate 2
GSM2522671
AF9_AES_KO
GSM2522672
AF9_AES_WT
GSM2522673
MYC_AES_KO
GSM2522674
MYC_AES_WT
GSM2522675
U937_AML1.ETO
GSM2522676
U937_MIG
This SuperSeries is composed of the following SubSeries:
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GSE80523
Expression profile of small nucleolar RNA (snoRNA) in acute myeloid leukemia.
GSE80579
Expression data from AML1-ETO9a mouse primary leukemia blast
GSE80581
Identification of Amino Enhancer of Split (AES) and DDX21 binding snoRNAs by RIP-Seq.
GSE80582
Nascent RNA-seq in Kasumi-1 cells
Relations
BioProject
PRJNA319473
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE80602_RAW.tar
27.4 Mb
(http)
(custom)
TAR (of CEL, TXT)
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