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GEO accession:
Sample GSM518359
Query DataSets for GSM518359
Status
Public on Mar 06, 2010
Title
aom tumor viras 13939
Sample type
RNA
Source name
colonic tumor
Organism
Mus musculus
Characteristics
tissue: distal colon
tumor type: AOM induced
genome/variation: K-rasG12Dint
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy kit
Label
biotin
Label protocol
Affymetrix standard
Hybridization protocol
Affymetrix standard
Scan protocol
Scanner model Affymetrix scanner 3007G, Affymetrix standard, core software GCOS (Gene Chip Operating System) was used for image processing
Description
K-rasG12Dint
Data processing
GCOS software was used for generation of primary data, processing algorithm was RMA, filtering methods and statistical analysis wrwe done with SAM
Submission date
Mar 05, 2010
Last update date
Mar 05, 2010
Contact name
Moritz Bennecke
Organization name
Klinikum r.d.Isar
Department
II. Med Klinik
Lab
F.R. Greten
Street address
Ismaninger Str. 22
City
Muenchen
ZIP/Postal code
81675
Country
Germany
Platform ID
GPL6246
Series (1)
GSE20647
Expression analysis of AOM-induced tumors and serrated tumors in mice
Data table header descriptions
ID_REF
VALUE
RMA normalized (GCOS) signal intensity
Data table
ID_REF
VALUE
10338001
11.4718
10338002
5.34096
10338003
10.0776
10338004
8.83614
10338005
1.26
10338006
1.42652
10338007
1.67189
10338008
2.19364
10338009
7.74914
10338010
1.30273
10338011
4.37518
10338012
1.33719
10338013
1.1787
10338014
1.24915
10338015
1.21927
10338016
6.74729
10338017
12.0897
10338018
5.80626
10338019
3.74586
10338020
7.68012
Total number of rows:
35557
Table truncated, full table size
586 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM518359.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
GSM518359.chp.gz
268.7 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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