GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM518361
Query DataSets for GSM518361
Status
Public on Mar 06, 2010
Title
tumor virasp16 14516
Sample type
RNA
Source name
colonic tumor
Organism
Mus musculus
Characteristics
tissue: proximal colon
tumor type: serrated tumor
genome/variation: K-rasG12Dint/Ink4a/Arf-/-
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy kit
Label
biotin
Label protocol
Affymetrix standard
Hybridization protocol
Affymetrix standard
Scan protocol
Scanner model Affymetrix scanner 3007G, Affymetrix standard, core software GCOS (Gene Chip Operating System) was used for image processing
Description
K-rasG12Dint/Ink4a/Arf-/-
Data processing
GCOS software was used for generation of primary data, processing algorithm was RMA, filtering methods and statistical analysis wrwe done with SAM
Submission date
Mar 05, 2010
Last update date
Mar 05, 2010
Contact name
Moritz Bennecke
Organization name
Klinikum r.d.Isar
Department
II. Med Klinik
Lab
F.R. Greten
Street address
Ismaninger Str. 22
City
Muenchen
ZIP/Postal code
81675
Country
Germany
Platform ID
GPL6246
Series (1)
GSE20647
Expression analysis of AOM-induced tumors and serrated tumors in mice
Data table header descriptions
ID_REF
VALUE
RMA normalized (GCOS) signal intensity
Data table
ID_REF
VALUE
10338001
11.5179
10338002
5.50982
10338003
10.2244
10338004
9.15856
10338005
1.27774
10338006
1.46114
10338007
1.71458
10338008
2.35846
10338009
8.01906
10338010
1.30273
10338011
4.75258
10338012
1.36578
10338013
1.16915
10338014
1.24504
10338015
1.20128
10338016
7.05476
10338017
12.193
10338018
6.12736
10338019
3.97821
10338020
7.95122
Total number of rows:
35557
Table truncated, full table size
586 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM518361.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
GSM518361.chp.gz
268.4 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
