GEO Profile Links for PMC (Select 156749) - GEO Profiles

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Links from PMC

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Select item 355650631.

soxR - Anaerobic growth (I)

Annotation:: soxR, redox-sensitive transcriptional activator of soxS; autorepressor

Organism:: Escherichia coli

Reporter:: GPL3503, 4063 (ID_REF), GDS2588, B4063 (ORF)

DataSet type:: Expression profiling by array, log2 ratio, 6 samples

ID:: 35565063

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 355258292.

rsxC - Recovery from stationary phase: time course (I)

Annotation:: rsxC, SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex

Organism:: Escherichia coli

Reporter:: GPL3503, 1629 (ID_REF), GDS2580, B1629 (ORF)

DataSet type:: Expression profiling by array, log2 ratio, 7 samples

ID:: 35525829

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 355488293.

rsxC - Recovery from stationary phase: time course (III)

Annotation:: rsxC, SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex

Organism:: Escherichia coli

Reporter:: GPL3503, 1629 (ID_REF), GDS2585, B1629 (ORF)

DataSet type:: Expression profiling by array, log2 ratio, 7 samples

ID:: 35548829

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 355442294.

rsxC - Recovery from stationary phase: time course (II)

Annotation:: rsxC, SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex

Organism:: Escherichia coli

Reporter:: GPL3503, 1629 (ID_REF), GDS2584, B1629 (ORF)

DataSet type:: Expression profiling by array, log2 ratio, 11 samples

ID:: 35544229

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 355304305.

rsxD - Indole acrylate treatment: time course (I)

Annotation:: rsxD, SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex

Organism:: Escherichia coli

Reporter:: GPL3503, 1630 (ID_REF), GDS2581, B1630 (ORF)

DataSet type:: Expression profiling by array, log2 ratio, 4 samples

ID:: 35530430

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 876080016.

c2020 - Escherichia coli O157:H7 response to cinnamaldehyde: time course

Annotation:: c2020, electron transport complex protein RnfB (multiple annotations exist)

Organism:: Escherichia coli, Escherichia coli O157:H7

Reporter:: GPL3154, 1766652_s_at (ID_REF), GDS4321, 1036107 (Gene ID), 912556 (Gene ID), 946146 (Gene ID), 961578 (Gene ID), b1628 (ORF)

DataSet type:: Expression profiling by array, transformed count, 8 samples

ID:: 87608001

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 5577227.

rsxE - Tryptophan metabolism (ecoli_3.0)

Annotation:: rsxE, SoxR iron-sulfur cluster reduction factor component; electron transport inner membrane NADH-quinone reductase

Organism:: Escherichia coli

Reporter:: GPL16, 3422 (ID_REF), GDS95, B1632 (ORF)

DataSet type:: Expression profiling by array, log ratio, 9 samples

ID:: 557722

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 355304328.

rsxE - Indole acrylate treatment: time course (I)

Annotation:: rsxE, SoxR iron-sulfur cluster reduction factor component; electron transport inner membrane NADH-quinone reductase

Organism:: Escherichia coli

Reporter:: GPL3503, 1632 (ID_REF), GDS2581, B1632 (ORF)

DataSet type:: Expression profiling by array, log2 ratio, 4 samples

ID:: 35530432

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 355304299.

rsxC - Indole acrylate treatment: time course (I)

Annotation:: rsxC, SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex

Organism:: Escherichia coli

Reporter:: GPL3503, 1629 (ID_REF), GDS2581, B1629 (ORF)

DataSet type:: Expression profiling by array, log2 ratio, 4 samples

ID:: 35530429

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 3552583010.

rsxD - Recovery from stationary phase: time course (I)

Annotation:: rsxD, SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex

Organism:: Escherichia coli

Reporter:: GPL3503, 1630 (ID_REF), GDS2580, B1630 (ORF)

DataSet type:: Expression profiling by array, log2 ratio, 7 samples

ID:: 35525830

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 11608065011.

soxR - Gentamicin effect on fur-deficient cells

Annotation:: soxR, redox-sensitive transcriptional activator SoxR (multiple annotations exist)

Organism:: Escherichia coli, Escherichia coli str. K-12 substr. MG1655

Reporter:: GPL3154, 1760634_s_at (ID_REF), GDS5162, 1039198 (Gene ID), 914292 (Gene ID), 948566 (Gene ID), 960061 (Gene ID), b4063 (ORF)

DataSet type:: Expression profiling by array, transformed count, 12 samples

ID:: 116080650

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 3557182612.

ydgK - Anaerobic growth (III)

Annotation:: ydgK, DUF2569 family inner membrane protein

Organism:: Escherichia coli

Reporter:: GPL3503, 1626 (ID_REF), GDS2590, B1626 (ORF)

DataSet type:: Expression profiling by array, log2 ratio, 6 samples

ID:: 35571826

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 3553502913.

rsxC - Indole acrylate treatment: time course (II)

Annotation:: rsxC, SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex

Organism:: Escherichia coli

Reporter:: GPL3503, 1629 (ID_REF), GDS2582, B1629 (ORF)

DataSet type:: Expression profiling by array, log2 ratio, 4 samples

ID:: 35535029

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 55628214.

rsxD - Tryptophan metabolism (ecoli_3.0)

Annotation:: rsxD, SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex

Organism:: Escherichia coli

Reporter:: GPL16, 1982 (ID_REF), GDS95, B1630 (ORF)

DataSet type:: Expression profiling by array, log ratio, 9 samples

ID:: 556282

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 11603335015.

soxR - Multiple bactericidal antibiotics

Annotation:: soxR, redox-sensitive transcriptional activator SoxR (multiple annotations exist)

Organism:: Escherichia coli, Escherichia coli str. K-12 substr. MG1655

Reporter:: GPL3154, 1760634_s_at (ID_REF), GDS5160, 1039198 (Gene ID), 914292 (Gene ID), 948566 (Gene ID), 960061 (Gene ID), b4063 (ORF)

DataSet type:: Expression profiling by array, transformed count, 18 samples

ID:: 116033350

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 4312305016.

soxR - Enterohemorrhagic Escherichia coli response to epinephrine, norepinephrine, and indole

Annotation:: soxR, redox-sensitive transcriptional activator SoxR (multiple annotations exist)

Organism:: Escherichia coli

Reporter:: GPL3154, 1760634_s_at (ID_REF), GDS2879, 1039198 (Gene ID), 914292 (Gene ID), 948566 (Gene ID), 960061 (Gene ID), b4063 (ORF)

DataSet type:: Expression profiling by array, count, 4 samples

ID:: 43123050

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 3556357017.

rseC - Anaerobic growth (I)

Annotation:: rseC, SoxR iron-sulfur cluster reduction factor component

Organism:: Escherichia coli

Reporter:: GPL3503, 2570 (ID_REF), GDS2588, B2570 (ORF)

DataSet type:: Expression profiling by array, log2 ratio, 6 samples

ID:: 35563570

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 56201218.

rsxD - Tryptophan metabolism (ecoli_4.3)

Annotation:: rsxD, SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex

Organism:: Escherichia coli

Reporter:: GPL17, 1712 (ID_REF), GDS96, B1630 (ORF)

DataSet type:: Expression profiling by array, log ratio, 9 samples

ID:: 562012

GEO DataSets Gene Profile neighbors Chromosome neighbors

Select item 56170619.

rsxC - Tryptophan metabolism (ecoli_4.3)

Annotation:: rsxC, SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex