GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Orbicella faveolata

Type:

Expression profiling by array

Platform:

GPL6515

26 Samples

Download data: GPR

(Submitter supplied) The declining health of coral reefs worldwide is likely to intensify in response to continued anthropogenic disturbance from coastal development, pollution, and climate change. In response to these stresses, reef-building corals may exhibit bleaching, which marks the breakdown in symbiosis between coral and zooxanthellae. Mass coral bleaching due to elevated water temperature can devastate coral reefs on a large geographic scale. more...

Organism:

Orbicella faveolata

Type:

Expression profiling by array

Platform:

GPL6515

16 Samples

Download data: GPR

(Submitter supplied) The declining health of coral reefs worldwide is likely to intensify in response to continued anthropogenic disturbance from coastal development, pollution, and climate change. In response to these stresses, reef-building corals may exhibit bleaching, which marks the breakdown in symbiosis between coral and zooxanthellae. Mass coral bleaching due to elevated water temperature can devastate coral reefs on a large geographic scale. more...

Organism:

Orbicella faveolata

Type:

Expression profiling by array

Platform:

GPL6515

10 Samples

Download data: GPR

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Orbicella faveolata

Type:

Expression profiling by array

Platform:

GPL7317

33 Samples

Download data: MEV

(Submitter supplied) A mutualistic relationship between reef-building corals and endosymbiotic algae (Symbiodinium spp.) forms the basis for the existence of coral reefs. Genotyping tools for Symbiodinium spp. have added a new level of complexity to studies concerning cnidarian growth, nutrient acquisition, and stress. For example, the response of the coral holobiont to thermal stress is connected to the host-Symbiodinium genotypic combination, as different partnerships can have different bleaching susceptibilities. more...

Organism:

Orbicella faveolata

Type:

Expression profiling by array

Platform:

GPL7317

15 Samples

Download data: MEV, TXT

(Submitter supplied) Given the overwhelming evidence that symbiont genotypes differentially affect host processes such as growth, bleaching susceptibility, and nutrient acquisition, we set out to measure gene expression differences in fragments of Montastraea faveolata harboring two different clades of Symbiodinium. On the reefs near Puerto Morelos, México, colonies of M. faveolata are known to shift algal symbiont clade with depth, often associating with clade A at the top, clade B in the middle, and clade C near the bottom of the colony. more...

Organism:

Orbicella faveolata

Type:

Expression profiling by array

Platform:

GPL7317

18 Samples

Download data: MEV

(Submitter supplied) Coral reefs are based on the symbiotic relationship between corals and photosynthetic dinoflagellates of the genus Symbiodinium. We followed gene expression of coral larvae of Acropora palmata and Montastraea faveolata after exposure to Symbiodinium strains that differed in their ability to establish symbioses. We show that the coral host transcriptome remains almost unchanged during infection by competent symbionts, but is massively altered by symbionts that fail to establish symbioses. more...

Organism:

Orbicella faveolata; Acropora palmata

Type:

Expression profiling by array

Platforms:

GPL8208 GPL8215

36 Samples

Download data: MEV

(Submitter supplied) Microarray technology provides a powerful tool for gene discovery studies, but the development of microarrays for individual species can be expensive and time-consuming. In this study, we test the suitability of a Danio rerio oligonucleotide microarray for application in a species with few genomic resources, the coral reef fish Pomacentrus moluccensis. Coral reef fishes are expected to experience rising sea surface temperatures due to climate change. more...

Organism:

Danio rerio; Pomacentrus moluccensis

Type:

Expression profiling by array; Genome variation profiling by array

Platform:

GPL3365

8 Samples

Download data: TIFF

(Submitter supplied) Scleractinian corals are the major builders of the complex structural framework of coral reefs. They live in tropical waters around the globe where they are frequently exposed to potentially harmful ultraviolet radiation (UVR). Coral eggs and early embryonic stages are thought to be the most sensitive life stages of corals to UVR given that they are highly buoyant and remain near the sea surface for prolonged periods of time. more...

Organism:

Orbicella faveolata

Type:

Expression profiling by array

Platform:

GPL11119

30 Samples

Download data

(Submitter supplied) Microarrays consist of PCR-amplified cDNAs from M. faveolata. 1,314 PCR-amplified cDNAs were spotted in duplicate on poly-lysine-coated slides yielding a microarray with 2,628 total features. cDNAs were chosen from EST libraries described in (Schwarz et al., 2008). To annotate the cDNAs, we performed a BLASTx analysis (E-value cut-off 1e-5) against the GenBank non-redundant DNA and protein database (nr).

Organism:

Orbicella faveolata

1 Series

18 Samples

Download data: TXT

(Submitter supplied) Microarrays consist of PCR-amplified cDNAs from A. palmata. 2,055 PCR-amplified cDNAs were spotted in duplicate on poly-lysine-coated slides yielding a microarray with 4,110 total features. cDNAs were chosen from EST libraries described in (Schwarz et al., 2008). To annotate the cDNAs, we performed a BLASTx analysis (E-value cut-off 1e-5) against the GenBank non-redundant DNA and protein database (nr).

Organism:

Acropora palmata

1 Series

18 Samples

Download data: TXT

(Submitter supplied) Background Coral reefs are expected to be severely impacted by rising seawater temperatures associated with climate change. This study used cDNA microarrays to investigate transcriptional effects of thermal stress in embryos of the coral Montastraea faveolata. Embryos were exposed to 27.5C, 29.0C, and 31.5C directly after fertilization. Differences in gene expression were measured after 12 and 48 hours. more...

Organism:

Orbicella faveolata

Type:

Expression profiling by array

Platform:

GPL8248

18 Samples

Download data: MEV

(Submitter supplied) RNASeq data on corals transplanted reciprocally into two different thermal microhabitats on Ofu Island

Organism:

Acropora aff. hyacinthus sp. E JTL-2012

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18475

12 Samples

Download data: TXT

(Submitter supplied) Over the past several decades, corals worldwide have been affected by global warming, experiencing severe bleaching events that have often lead to coral death. The symbiotic Red Sea coral Stylophora pistillata is considered an opportunistic ‘r’ strategist, thriving in relatively unstable and unpredictable environments, and it is considered a stress-tolerant species. This study aimed to examine S. pistillata gene expression and to clarify the cellular pathways that are active during short-term heat stress caused by an increase from 24°C to 34°C over a 10-day period. more...

Organism:

Stylophora pistillata

Type:

Expression profiling by array

Platform:

GPL17270

14 Samples

Download data: TXT

(Submitter supplied) Thermal history plays a role in the response of corals to subsequent heat stress. Prior heat stress can have a profound impact on later thermal tolerance, but the mechanism for this plasticity is not clear. The understanding of gene expression changes behind physiological acclimatization is critical in forecasts of coral health in impending climate change scenarios. Acropora millepora fragments were preconditioned to sublethal bleaching threshold stress for a period of 10 days; this prestress conferred bleaching resistance in subsequent thermal challenge, in which non-preconditioned coral bleached. more...

Organism:

Acropora millepora

Type:

Expression profiling by array

Platform:

GPL6941

45 Samples

Download data: GPR

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Anemonia viridis

Type:

Expression profiling by array

Platform:

GPL10546

15 Samples

Download data: GPR

(Submitter supplied) Differential expression between endodermal (zooxanthellate) and ectodermal tissue layers in the endosymbiotic sea anemone Anemonia viridis has been analyzed for 3 specimens subjected to a thermal stress (+10°C) for a 2 days period. A symbiosis-dedicated oligonucleotide microarray (2000 selected features) was generated, representing to date the only available oligonucleotide array used for symbiotic cnidarians (GPL10546). more...

Organism:

Anemonia viridis

Type:

Expression profiling by array

Platform:

GPL10546

3 Samples

Download data: GPR

(Submitter supplied) We monitored gene expression response of the symbiotic sea anemone Anemonia viridis subjected to a thermal and/or UV stress. A symbiosis-dedicated oligonucleotide microarray (2000 selected features) was generated, representing to date the only available oligonucleotide array used for symbiotic cnidarians (GPL10546). We are describing here the expression evolution during the first phase (5 days) of the stress.

Organism:

Anemonia viridis

Type:

Expression profiling by array

Platform:

GPL10546

12 Samples

Download data: GPR

(Submitter supplied) Scleractinian corals acquire autotrophic nutrients via the photosynthetic activity of their symbionts and the subsequent transfer of photosynthates. Zooplankton predation by the animal (heterotrophy) is an additional food source. Under stress events, corals loose their symbionts, a phenomena known as bleaching, which eventually leads to starvation, unless corals increase their heterotrophic capacities. more...

Organism:

Stylophora pistillata

Type:

Expression profiling by array

Platform:

GPL17270

18 Samples

Download data: TXT

(Submitter supplied) Purpose: Corals are major sources of dimethylsulphoniopropionate (DMSP), a compound that plays a central role in the global sulphur cycle. While DMSP biosynthesis pathways have been investigated in plants and algae, the molecular basis for its production by corals is unknown. Given its potential role as an osmolyte, the effect of salinity stress on levels of DMSP was investigated in both adults and juveniles (lacking photosynthetic symbionts) of the coral Acropora millepora. more...

Organism:

Acropora millepora

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23215

45 Samples

Download data: CSV, FASTA, GFF, TXT